Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_887

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_887: 9255 - K04409 PAK1 p21-activated kinase 1, at 2120466 to 2123959 9255 mRNA_888: 9256 - KOG1773 Stress responsive protein, at 2124160 to 2125041 9256

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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2,119,470 - -0.2
2,119,560 + 1.2
2,119,732 + -0.2
2,119,812 - -0.0
2,119,821 - 0.1
2,119,838 - -0.2
2,119,847 + -0.8
2,119,899 + -0.3
2,119,899 + 0.1
2,119,904 - 0.4
2,119,904 - 0.2
2,119,907 - 0.1
2,119,916 + -0.7
2,119,916 + 0.3
2,119,917 - 1.5
2,119,930 - 0.1
2,119,937 - 1.6
2,120,033 + -0.8
2,120,038 + 0.1
2,120,040 + 1.1
2,120,046 + 0.3
2,120,056 + 3.1
2,120,058 + 0.1
2,120,066 + 1.3
2,120,088 + 0.1
2,120,188 - 0.3
2,120,199 + 0.2
2,120,200 - -0.3
2,120,202 - 0.5
2,120,207 - 0.1
2,120,223 - 1.6
2,120,230 - 0.7
2,120,351 + 0.1
2,120,356 - 0.6
2,120,387 - 0.2
2,120,407 + 1.7
2,120,508 - 0.0
2,120,660 + 0.5
2,120,671 - 0.8
2,120,674 - 0.7
2,121,048 - 9255 mRNA_887 0.17 0.7
2,121,550 - 9255 mRNA_887 0.31 -0.6
2,121,689 + 9255 mRNA_887 0.35 0.7
2,121,797 - 9255 mRNA_887 0.38 -0.0
2,121,821 - 9255 mRNA_887 0.39 1.1
2,121,966 - 9255 mRNA_887 0.43 0.8
2,122,885 + 9255 mRNA_887 0.69 0.3
2,122,995 - 9255 mRNA_887 0.72 0.6
2,123,679 - 0.5
2,123,859 - -0.2
2,123,957 + 0.7
2,124,003 + 0.1
2,124,009 - 0.7
2,124,108 - 0.2
2,124,139 - 0.5
2,124,179 - 2.1
2,124,192 - -0.3
2,124,295 - 9256 mRNA_888 0.15 -0.7
2,124,351 - 9256 mRNA_888 0.22 -0.5
2,124,464 + 9256 mRNA_888 0.34 0.1
2,124,744 - 9256 mRNA_888 0.66 0.4
2,124,878 - 9256 mRNA_888 0.81 0.7