Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_813

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_812: 9180 - K00474 TMLHE trimethyllysine dioxygenase, at 1932438 to 1934306 9180 mRNA_813: 9181 - KOG1515 Arylacetamide deacetylase, at 1934568 to 1937031 9181 mRNA_814: 9182 - K15075 MET18, MMS19 DNA repair/transcription protein MET18/MMS19, at 1937554 to 1941739 9182

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,934,341 + 0.3
1,934,447 - 0.0
1,934,614 + -0.9
1,935,085 - 9181 mRNA_813 0.21 0.3
1,935,327 - 9181 mRNA_813 0.31 0.2
1,935,490 - 9181 mRNA_813 0.37 1.1
1,935,647 - 9181 mRNA_813 0.44 0.3
1,936,065 + 9181 mRNA_813 0.61 0.3
1,936,226 - 9181 mRNA_813 0.67 -0.3
1,936,509 + 9181 mRNA_813 0.79 -0.4
1,936,623 - 9181 mRNA_813 0.83 -0.1
1,936,632 + 9181 mRNA_813 0.84 0.3
1,936,651 - 9181 mRNA_813 0.85 1.1
1,936,689 + 9181 mRNA_813 0.86 -1.1
1,936,700 + 9181 mRNA_813 0.87 2.1
1,936,701 - 9181 mRNA_813 0.87 0.3
1,936,806 + 0.9
1,936,954 - 0.2
1,936,994 - 0.9
1,937,086 - 1.9
1,937,095 - -0.2
1,937,106 + 0.7
1,937,113 - 0.5
1,937,115 + 0.3
1,937,147 - -0.7
1,937,160 + 0.4
1,937,210 + 0.2
1,937,293 - 1.1
1,937,301 - -0.2
1,937,305 + -0.2
1,937,308 + 0.0
1,937,311 - 2.0
1,937,342 - -0.3
1,937,351 + -0.3
1,937,371 - 1.5
1,937,419 - 0.2
1,937,421 - -0.1
1,937,427 + 1.8