Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_772

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_770: 9138 - K10765 ALKBH1 alkylated DNA repair protein alkB homolog 1, at 1835297 to 1836834 9138 mRNA_771: 9139 - KOG0254 Predicted transporter (major facilitator superfamily), at 1837244 to 1837694 9139 mRNA_772: 9140 - Hypothetical Protein, at 1837682 to 1837975 9140 mRNA_773: 9141 - BLAST alpha,alpha-trehalase [Microbotryum lychnidis-dioicae..., at 1838436 to 1839062 9141

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,836,877 - -0.2
1,836,900 - 0.8
1,837,037 - -0.2
1,837,612 - 9139 mRNA_771 0.82 0.0
1,837,874 + 9140 mRNA_772 0.65 -0.7
1,837,906 + 9140 mRNA_772 0.76 0.0
1,838,047 - 0.9
1,838,051 - 0.2
1,838,068 - 0.1
1,838,068 + 0.9
1,838,070 + 1.0
1,838,071 + -0.4
1,838,074 - 0.7
1,838,085 - 1.1
1,838,088 - 0.5
1,838,090 + 0.6
1,838,090 + 0.6
1,838,090 + 0.4
1,838,090 + 0.2
1,838,090 + 0.3
1,838,090 - 1.1
1,838,091 - 0.3
1,838,094 + 0.5
1,838,094 + 0.2
1,838,171 + 1.7
1,838,219 - 0.1
1,838,220 - -0.1
1,838,222 + 2.1
1,838,230 - 0.4
1,838,233 + 2.8
1,838,373 + 0.7
1,838,508 + 9141 mRNA_773 0.11 -0.0
1,838,510 + 9141 mRNA_773 0.12 0.0
1,838,563 - 9141 mRNA_773 0.20 0.0
1,838,662 - 9141 mRNA_773 0.36 0.0
1,838,961 - 9141 mRNA_773 0.84 -0.0