Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_769

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_768: 9136 - Hypothetical Protein, at 1831293 to 1832129 9136 mRNA_769: 9137 - K08141 MAL MFS transporter, SP family, general alpha glucoside-H+ symporter, at 1832128 to 1834944 9137 mRNA_770: 9138 - K10765 ALKBH1 alkylated DNA repair protein alkB homolog 1, at 1835297 to 1836834 9138

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,831,129 - 0.5
1,831,147 + 2.4
1,831,163 + -0.2
1,831,216 + 1.5
1,831,231 - 0.5
1,831,240 + 0.5
1,831,254 + -0.5
1,831,258 - 0.7
1,831,279 - 0.4
1,831,281 + -0.1
1,831,281 - 1.2
1,831,328 + 0.5
1,831,328 + 1.3
1,831,372 - 0.4
1,831,374 - 0.2
1,831,381 - 9136 mRNA_768 0.11 -0.0
1,831,383 - 9136 mRNA_768 0.11 0.3
1,831,385 - 9136 mRNA_768 0.11 -0.1
1,831,415 + 9136 mRNA_768 0.15 0.5
1,831,417 - 9136 mRNA_768 0.15 0.4
1,831,443 + 9136 mRNA_768 0.18 2.0
1,831,445 + 9136 mRNA_768 0.18 -0.1
1,831,447 + 9136 mRNA_768 0.18 0.4
1,831,462 + 9136 mRNA_768 0.20 0.1
1,831,489 - 9136 mRNA_768 0.23 -0.0
1,831,490 + 9136 mRNA_768 0.24 0.2
1,831,504 + 9136 mRNA_768 0.25 -0.5
1,831,510 - 9136 mRNA_768 0.26 0.9
1,831,513 - 9136 mRNA_768 0.26 1.0
1,831,527 - 9136 mRNA_768 0.28 -1.0
1,831,531 + 9136 mRNA_768 0.28 0.1
1,831,552 + 9136 mRNA_768 0.31 -0.4
1,831,565 + 9136 mRNA_768 0.32 -0.3
1,831,566 + 9136 mRNA_768 0.33 0.6
1,831,584 - 9136 mRNA_768 0.35 1.2
1,831,593 - 9136 mRNA_768 0.36 0.0
1,831,600 + 9136 mRNA_768 0.37 -0.4
1,831,620 - 9136 mRNA_768 0.39 -0.4
1,831,626 + 9136 mRNA_768 0.40 0.1
1,831,637 + 9136 mRNA_768 0.41 0.7
1,831,656 + 9136 mRNA_768 0.43 1.5
1,831,733 + 9136 mRNA_768 0.53 0.4
1,831,757 - 9136 mRNA_768 0.55 0.7
1,831,757 + 9136 mRNA_768 0.55 0.7
1,831,776 + 9136 mRNA_768 0.58 -0.1
1,831,802 + 9136 mRNA_768 0.61 0.3
1,831,840 + 9136 mRNA_768 0.65 0.6
1,831,843 - 9136 mRNA_768 0.66 -0.7
1,831,850 - 9136 mRNA_768 0.67 0.8
1,831,869 + 9136 mRNA_768 0.69 1.1
1,831,873 + 9136 mRNA_768 0.69 0.2
1,831,882 - 9136 mRNA_768 0.70 -0.1
1,831,886 + 9136 mRNA_768 0.71 0.8
1,831,897 + 9136 mRNA_768 0.72 0.4
1,831,912 - 9136 mRNA_768 0.74 0.2
1,831,923 + 9136 mRNA_768 0.75 0.4
1,831,927 + 9136 mRNA_768 0.76 -0.1
1,831,992 - 9136 mRNA_768 0.84 0.3
1,832,167 + 0.3
1,832,293 + 0.9
1,832,326 - 1.4
1,832,467 - 9137 mRNA_769 0.12 0.1
1,832,480 + 9137 mRNA_769 0.12 1.1
1,832,486 + 9137 mRNA_769 0.13 -1.6
1,832,768 + 9137 mRNA_769 0.23 0.5
1,832,962 + 9137 mRNA_769 0.30 0.9
1,833,049 + 9137 mRNA_769 0.33 0.9
1,833,147 + 9137 mRNA_769 0.36 0.6
1,833,509 - 9137 mRNA_769 0.49 0.8
1,833,642 - 9137 mRNA_769 0.54 1.3
1,833,664 + 9137 mRNA_769 0.55 0.6
1,833,839 - 9137 mRNA_769 0.61 0.1
1,834,074 - 9137 mRNA_769 0.69 0.4
1,834,398 + 9137 mRNA_769 0.81 0.3
1,834,704 + 0.1
1,834,794 + 0.5
1,834,988 - 0.1
1,835,187 + 0.3
1,835,187 + -0.7
1,835,419 + 0.5
1,835,567 + 9138 mRNA_770 0.18 1.3
1,835,593 + 9138 mRNA_770 0.19 0.7
1,835,847 + 9138 mRNA_770 0.36 0.1