Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_688

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_687: 9055 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1646516 to 1647919 9055 mRNA_688: 9056 - Hypothetical Protein, at 1648310 to 1648900 9056 mRNA_689: 9057 - HMMPfam-Eisosome component PIL1-PF13805, at 1649423 to 1652202 9057

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,647,325 + 9055 mRNA_687 0.58 0.9
1,647,766 + 9055 mRNA_687 0.89 0.0
1,647,960 + -0.1
1,648,654 + 9056 mRNA_688 0.58 1.1
1,648,675 + 9056 mRNA_688 0.62 -1.0
1,648,681 + 9056 mRNA_688 0.63 0.7
1,649,048 + -0.3
1,649,065 - -0.3
1,649,074 - 0.2
1,649,075 - -0.1
1,649,077 - 0.9
1,649,083 + 0.7
1,649,087 - 0.7
1,649,102 + 0.1
1,649,111 - 0.1
1,649,114 + -0.4
1,649,138 - 0.1
1,649,141 + 3.1
1,649,143 + 0.3
1,649,156 + 0.0
1,649,238 + 0.6
1,649,260 - 0.1
1,649,275 + 1.0
1,649,277 + 1.7
1,649,277 + 0.4
1,649,285 - 0.4
1,649,397 - 0.4
1,649,397 + 0.4
1,649,825 + 9057 mRNA_689 0.14 -0.6