Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_598

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_597: 8965 - ProSiteProfiles-APSES-type HTH DNA-binding domain profile.-PS51299,SUPERFAMILY--SSF54616, at 1435317 to 1436977 8965 mRNA_598: 8966 - ProSiteProfiles-F-box domain profile.-PS50181, at 1437888 to 1441324 8966 mRNA_599: 8967 - HMMPfam-2'-5' RNA ligase superfamily-PF13563,SUPERFAMILY--SSF55144, at 1441458 to 1442153 8967

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,436,952 - -0.2
1,436,954 + 2.0
1,437,210 - 0.4
1,437,218 + 0.3
1,437,219 - -0.5
1,437,222 + -0.2
1,437,223 + -0.2
1,437,242 + -0.5
1,437,243 - -0.4
1,437,255 - 0.9
1,437,281 - 0.6
1,437,295 - 1.4
1,437,301 + 0.3
1,437,321 - 0.1
1,437,329 - 0.1
1,437,334 + -0.1
1,437,349 + 0.7
1,437,360 - 2.0
1,437,383 + -0.0
1,437,399 - 1.0
1,437,401 - 0.1
1,437,402 - -0.3
1,437,456 - 0.1
1,437,505 + -0.4
1,437,534 - 0.1
1,437,558 + 0.5
1,437,558 + 0.6
1,437,716 - -0.0
1,437,827 + 0.9
1,437,862 + 0.0
1,438,002 + -0.5
1,438,257 + 8966 mRNA_598 0.11 -0.9
1,438,428 + 8966 mRNA_598 0.16 0.4
1,438,566 + 8966 mRNA_598 0.20 0.4
1,438,846 - 8966 mRNA_598 0.28 0.0
1,439,253 + 8966 mRNA_598 0.40 0.0
1,439,300 + 8966 mRNA_598 0.41 1.6
1,439,357 - 8966 mRNA_598 0.43 0.9
1,439,709 + 8966 mRNA_598 0.53 -0.4
1,439,833 + 8966 mRNA_598 0.57 0.4
1,440,138 + 8966 mRNA_598 0.65 0.3
1,440,901 + 8966 mRNA_598 0.88 1.4
1,440,909 + 8966 mRNA_598 0.88 -1.0
1,441,048 - -0.9
1,441,247 + 0.0
1,441,287 - 0.4
1,441,319 + 0.3
1,441,636 + 8967 mRNA_599 0.26 -0.2
1,441,648 - 8967 mRNA_599 0.27 -0.5
1,441,759 + 8967 mRNA_599 0.43 -0.4
1,441,801 + 8967 mRNA_599 0.49 -1.4
1,441,945 + 8967 mRNA_599 0.70 0.2
1,442,065 - 8967 mRNA_599 0.87 1.2
1,442,200 - -0.1
1,442,223 - 0.0