Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_522

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_521: 8889 - K15102 SLC25A3, PHC, PIC solute carrier family 25 (mitochondrial phosphate transporter), member 3, at 1236755 to 1238717 8889 mRNA_522: 8890 - K13026 DHX57 ATP-dependent RNA helicase DHX57, at 1238854 to 1244185 8890 mRNA_523: 8891 - K11644 SIN3A paired amphipathic helix protein Sin3a, at 1244383 to 1249643 8891

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,238,748 + 0.6
1,238,756 - 0.3
1,238,759 - 0.1
1,238,774 + -0.4
1,238,777 - 0.5
1,238,839 + 0.1
1,238,851 + 0.1
1,238,851 + -0.3
1,238,860 - -0.1
1,238,861 - 1.1
1,239,003 + -1.0
1,239,017 - 0.1
1,239,207 - -0.9
1,239,318 + 0.2
1,239,414 - 8890 mRNA_522 0.11 0.5
1,239,711 + 8890 mRNA_522 0.16 0.5
1,239,875 - 8890 mRNA_522 0.19 -0.0
1,239,981 - 8890 mRNA_522 0.21 0.4
1,240,265 - 8890 mRNA_522 0.26 0.1
1,240,307 + 8890 mRNA_522 0.27 0.5
1,240,310 - 8890 mRNA_522 0.27 0.4
1,240,867 - 8890 mRNA_522 0.38 -0.0
1,241,455 + 8890 mRNA_522 0.49 -0.4
1,241,918 - 8890 mRNA_522 0.57 -0.0
1,241,929 + 8890 mRNA_522 0.58 -0.0
1,242,253 + 8890 mRNA_522 0.64 -1.2
1,242,345 - 8890 mRNA_522 0.65 0.5
1,242,751 - 8890 mRNA_522 0.73 -0.0
1,242,811 + 8890 mRNA_522 0.74 1.9
1,243,118 + 8890 mRNA_522 0.80 -0.4
1,244,016 + 1.5
1,244,024 - 0.5
1,244,140 + 0.9
1,244,159 - -0.0
1,244,159 - -0.7
1,244,289 + 0.0
1,244,317 + -0.3