Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_444

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_443: 8811 - KOG2742 Predicted oxidoreductase, at 1029373 to 1030485 8811 mRNA_444: 8812 - HMMPfam-Transcription factor IIIC subunit delta N-term-PF12657,HMMPfam-Putative zinc-finger of transcription factor IIIC complex-PF12660,SUPERFAMILY--SSF50978, at 1030821 to 1034414 8812 mRNA_445: 8813 - K03768 PPIB, ppiB peptidyl-prolyl cis-trans isomerase B (cyclophilin B), at 1034694 to 1036039 8813

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,029,920 + 8811 mRNA_443 0.49 1.5
1,030,203 + 8811 mRNA_443 0.75 1.8
1,030,359 - 8811 mRNA_443 0.89 -0.8
1,030,364 + 8811 mRNA_443 0.89 1.9
1,030,379 + 1.9
1,030,669 - -0.9
1,030,674 + 0.8
1,030,679 + 1.4
1,030,681 + 1.3
1,030,691 + -0.4
1,030,813 + -1.0
1,031,490 - 8812 mRNA_444 0.19 -0.2
1,033,562 - 8812 mRNA_444 0.76 0.5
1,034,263 - 0.7
1,034,413 - 0.5
1,034,568 - -0.8
1,034,589 - 0.8
1,035,011 - 8813 mRNA_445 0.24 -0.2