Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_435

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_434: 8802 - K08738 CYC cytochrome c, at 1006677 to 1007742 8802 mRNA_435: 8803 - K14845 RAI1, DOM3Z RAT1-interacting protein, at 1008072 to 1010135 8803 mRNA_436: 8804 - HMMPfam-CLASP N terminal-PF12348, at 1010568 to 1012798 8804

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,007,787 - 0.9
1,007,800 + -0.3
1,007,801 + -0.2
1,007,809 + 1.2
1,007,820 - -0.1
1,007,878 + -0.4
1,007,971 + -0.2
1,008,000 + 0.6
1,008,388 + 8803 mRNA_435 0.15 0.2
1,009,471 + 8803 mRNA_435 0.68 1.2
1,009,567 + 8803 mRNA_435 0.72 -0.1
1,009,804 + 8803 mRNA_435 0.84 -0.2
1,009,913 - 8803 mRNA_435 0.89 -1.0
1,009,963 + -0.3
1,010,042 + 1.3
1,010,062 + 0.5
1,010,197 - 0.1
1,010,484 - 1.7
1,010,484 - 0.1
1,010,490 - -0.1
1,010,500 + -0.1
1,010,503 + -0.9
1,010,504 + -1.1
1,010,507 + 2.1
1,010,515 + 1.1
1,010,554 - 0.8