Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_404

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_403: 8771 - Hypothetical Protein, at 937327 to 938664 8771 mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939095 to 942093 8772 mRNA_405: 8773 - KOG4563 Cell cycle-regulated histone H1-binding protein, at 942527 to 943923 8773

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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938,188 - 8771 mRNA_403 0.64 -0.2
938,327 - 8771 mRNA_403 0.75 -0.1
938,351 - 8771 mRNA_403 0.77 0.6
938,481 + 8771 mRNA_403 0.86 0.7
938,532 - 0.3
938,545 + 0.0
938,621 + 0.2
938,654 + 0.3
939,082 - -0.6
939,087 + 0.3
939,114 + -1.0
939,190 + 1.0
939,393 + 1.8
939,592 - 8772 mRNA_404 0.17 1.1
940,557 + 8772 mRNA_404 0.49 0.4
940,767 - 8772 mRNA_404 0.56 0.4
940,870 - 8772 mRNA_404 0.59 0.1
940,893 - 8772 mRNA_404 0.60 0.1
941,120 + 8772 mRNA_404 0.68 1.8
941,252 + 8772 mRNA_404 0.72 1.7
941,513 - 8772 mRNA_404 0.81 -0.5
941,543 + 8772 mRNA_404 0.82 0.1
941,677 - 8772 mRNA_404 0.86 -0.1
941,927 + -0.8
941,940 + -1.0
941,973 + -0.5
941,973 - 0.6
941,978 + 0.8
942,098 - 3.0
942,116 + -0.0
942,123 - -0.1
942,123 + -0.2
942,125 + 0.8
942,128 + 0.3
942,132 - -0.2
942,146 + -0.7
942,165 + -0.7
942,174 + 0.1
942,175 - 1.2
942,179 + 0.6
942,181 + -0.6
942,196 + 0.8
942,202 + 0.2
942,206 + 0.3
942,208 - 1.8
942,209 + 0.5
942,210 + 0.8
942,211 + 0.7
942,225 - 0.6
942,242 + 0.9