Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_369

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853834 to 856786 8736 mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857232 to 859087 8737 mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859391 to 862171 8738

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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856,522 - 0.7
856,539 + -1.7
856,548 - 0.3
856,554 + -0.2
856,668 - 0.1
856,695 - 1.2
856,775 + 0.7
856,798 - -0.1
856,823 + 0.5
856,823 + 0.2
856,827 + 0.7
856,854 + -0.0
856,954 + 0.3
856,954 + 0.1
856,972 - -0.1
856,977 + 0.1
856,988 + -0.3
856,992 + 0.5
856,992 - 0.0
857,010 - 0.1
857,017 - 0.0
857,029 + 0.7
857,053 - 0.5
857,055 - -0.1
857,072 + 0.2
857,075 - 0.6
857,115 - 0.5
857,131 + 0.4
857,165 + 1.3
857,165 + -0.5
857,170 - 0.1
857,367 + 0.8
857,391 + 0.8
857,683 + 8737 mRNA_369 0.24 -0.1
858,116 - 8737 mRNA_369 0.48 -0.1
858,121 - 8737 mRNA_369 0.48 0.2
858,298 + 8737 mRNA_369 0.57 0.2
858,399 - 8737 mRNA_369 0.63 -1.6
858,720 + 8737 mRNA_369 0.80 0.1
859,014 - 0.8
859,174 - -0.3
859,178 + 0.7
859,181 + 0.7
859,183 + 0.4
859,186 + 1.0
859,285 + -0.1
859,329 - -0.3
859,343 + 1.1
859,448 - 0.2
859,599 + 0.5
859,878 - 8738 mRNA_370 0.18 1.5
859,900 + 8738 mRNA_370 0.18 0.2
859,954 - 8738 mRNA_370 0.20 -0.7