Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_346

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807833 to 810278 8713 mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810935 to 812073 8714 mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812263 to 813594 8715

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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810,286 + -0.2
810,289 - 0.1
810,290 - -0.5
810,292 + 0.2
810,313 + 0.4
810,328 - -0.5
810,410 - -0.9
810,436 - 0.3
810,452 + -0.5
810,460 + -0.6
810,461 + -0.8
810,598 - 0.6
810,603 + -0.5
810,614 + 0.2
810,746 - -0.5
810,893 - 1.6
810,900 - -0.0
810,903 + 0.8
811,779 - 8714 mRNA_346 0.74 -0.3
811,936 + 8714 mRNA_346 0.88 -0.4
812,083 + -1.4
812,210 - 0.2
812,408 - 8715 mRNA_347 0.11 -0.5
812,431 + 8715 mRNA_347 0.13 -0.1
812,504 - 8715 mRNA_347 0.18 -0.6
812,505 + 8715 mRNA_347 0.18 1.3
812,507 + 8715 mRNA_347 0.18 1.1
812,524 - 8715 mRNA_347 0.20 0.8
812,532 + 8715 mRNA_347 0.20 -0.5
812,535 + 8715 mRNA_347 0.20 -1.4
812,917 - 8715 mRNA_347 0.49 0.2
812,959 - 8715 mRNA_347 0.52 -0.1
812,966 + 8715 mRNA_347 0.53 0.0