Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_323

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_322: 8690 - Hypothetical Protein, at 764792 to 765740 8690 mRNA_323: 8691 - Hypothetical Protein, at 766259 to 767210 8691 mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767858 to 770027 8692

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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765,286 - 8690 mRNA_322 0.52 0.7
765,740 + 1.1
766,372 + 8691 mRNA_323 0.12 0.9
766,499 + 8691 mRNA_323 0.25 -0.2
766,950 - 8691 mRNA_323 0.73 0.5
767,067 - 8691 mRNA_323 0.85 -0.4
767,149 - 0.2
767,181 + 0.2
767,238 - 0.9
767,288 - 0.2
767,324 + 0.3
767,333 + 0.6
767,337 + 0.4
767,361 - -0.8
767,411 + 0.5
767,506 - -0.6
767,511 + 0.2
767,530 - 0.7
767,530 - -0.0
767,537 + 0.2
767,538 + 1.0
767,557 + 0.2
767,564 - 1.6
767,577 + -0.2
767,585 + 0.2
767,594 + 1.4
767,603 + 0.5
767,653 - 0.3
767,658 - 0.1
767,664 - 0.8
767,664 - 0.3
767,680 + 0.5
767,685 + 1.2
767,784 + 0.5
767,821 - 1.2
767,823 + -0.3
767,839 + 0.8
767,865 + 0.5
767,964 - 0.1
768,124 + 8692 mRNA_324 0.12 0.4
768,128 + 8692 mRNA_324 0.12 1.5