Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_315

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749609 to 751814 8682 mRNA_315: 8683 - Hypothetical Protein, at 752039 to 753953 8683 mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754275 to 756026 8684

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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751,422 + 8682 mRNA_314 0.82 1.8
751,689 - 1.8
751,708 - 0.9
751,711 - 0.9
751,713 + -0.6
751,716 + 0.6
751,836 - -0.4
751,838 - 0.5
751,843 - 2.9
751,844 - 0.5
751,849 + -0.4
751,850 - 1.2
751,874 + -0.1
751,875 + -0.5
751,980 + 0.4
751,987 - -0.7
752,009 + -0.3
752,009 - 0.5
752,010 + -0.2
752,031 + -0.3
752,032 - -0.2
752,041 - 0.9
752,049 + -0.4
752,050 + -0.8
752,061 + -0.2
752,067 - 0.8
752,069 + 0.0
752,069 - -0.1
752,081 + 0.4
752,084 + -0.0
752,086 + 0.1
752,088 + 1.0
752,100 + 0.8
752,112 + -1.2
752,123 + -0.3
752,134 + -0.4
752,142 - 0.5
752,157 - 0.6
752,161 + 0.3
752,161 + -0.9
752,162 - 0.5
752,175 - 1.0
752,189 + 0.6
752,191 + 0.6
752,192 + 0.6
752,192 + 0.7
752,212 + 0.9
752,213 - 0.9
752,227 - -0.3
752,272 + 8683 mRNA_315 0.12 0.8
752,274 - 8683 mRNA_315 0.12 0.3
752,283 + 8683 mRNA_315 0.13 0.5
752,288 - 8683 mRNA_315 0.13 0.2
752,293 + 8683 mRNA_315 0.13 0.6
752,295 - 8683 mRNA_315 0.13 -0.2
752,305 - 8683 mRNA_315 0.14 0.9
752,313 - 8683 mRNA_315 0.14 -1.0
752,315 - 8683 mRNA_315 0.14 -0.1
752,327 + 8683 mRNA_315 0.15 0.5
752,349 - 8683 mRNA_315 0.16 1.4
752,354 - 8683 mRNA_315 0.16 1.3
752,362 + 8683 mRNA_315 0.17 1.1
752,389 + 8683 mRNA_315 0.18 1.1
752,393 + 8683 mRNA_315 0.18 -0.6
752,404 + 8683 mRNA_315 0.19 1.4
752,416 - 8683 mRNA_315 0.20 -0.8
752,424 + 8683 mRNA_315 0.20 0.1
752,424 - 8683 mRNA_315 0.20 1.2
752,444 - 8683 mRNA_315 0.21 0.5
752,448 + 8683 mRNA_315 0.21 0.7
752,463 + 8683 mRNA_315 0.22 0.5
752,503 - 8683 mRNA_315 0.24 1.5
752,629 - 8683 mRNA_315 0.31 -0.2
752,662 - 8683 mRNA_315 0.33 1.1
752,692 - 8683 mRNA_315 0.34 1.3
752,748 + 8683 mRNA_315 0.37 0.4
752,874 + 8683 mRNA_315 0.44 0.5
753,201 - 8683 mRNA_315 0.61 0.9
753,324 + 8683 mRNA_315 0.67 1.0
753,345 - 8683 mRNA_315 0.68 -0.3
753,476 - 8683 mRNA_315 0.75 1.1
753,607 - 8683 mRNA_315 0.82 0.8
753,763 + -0.1
754,049 + 0.6
754,060 + -0.2
754,194 - 1.9
754,208 + 0.1
754,469 - 8684 mRNA_316 0.11 -0.2
754,502 - 8684 mRNA_316 0.13 -0.2
754,505 + 8684 mRNA_316 0.13 1.8
754,652 + 8684 mRNA_316 0.22 0.3
754,764 - 8684 mRNA_316 0.28 0.9
754,897 - 8684 mRNA_316 0.36 0.8