Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_296

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_295: 8663 - KOG3069 Peroxisomal NUDIX hydrolase, at 696083 to 698097 8663 mRNA_296: 8664 - K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3, at 698223 to 702275 8664 mRNA_297: 8665 - Hypothetical Protein, at 702591 to 702936 8665

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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697,472 + 8663 mRNA_295 0.69 -0.7
697,479 - 8663 mRNA_295 0.69 0.5
697,496 + 8663 mRNA_295 0.70 0.3
697,604 + 8663 mRNA_295 0.75 -0.6
697,608 - 8663 mRNA_295 0.76 0.2
697,733 - 8663 mRNA_295 0.82 0.4
697,741 + 8663 mRNA_295 0.82 0.9
697,751 - 8663 mRNA_295 0.83 0.3
697,762 - 8663 mRNA_295 0.83 1.4
697,896 - -0.1
697,906 - -1.2
698,034 + 0.3
698,174 - -0.2
698,177 + -0.1
698,189 + 1.0
698,194 + 0.6
698,199 + -0.0
698,203 + -0.2
699,653 - 8664 mRNA_296 0.35 2.0
700,609 - 8664 mRNA_296 0.59 0.4
700,831 - 8664 mRNA_296 0.64 -0.3
701,873 - 0.8
702,351 + 1.0
702,491 + 0.0
702,510 + 0.6
702,532 - 1.9
702,534 - -0.9
702,649 - 8665 mRNA_297 0.17 0.6
702,660 - 8665 mRNA_297 0.20 -0.4
702,796 + 8665 mRNA_297 0.59 1.0
703,043 - 0.7