Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_290

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686748 to 688788 8657 mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689147 to 690940 8658 mRNA_291: 8659 - K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4, at 691511 to 692003 8659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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688,379 + 8657 mRNA_289 0.80 1.5
688,810 - 0.4
688,834 + 0.5
688,844 + 0.7
688,999 + 0.2
689,568 + 8658 mRNA_290 0.23 -0.1
689,869 + 8658 mRNA_290 0.40 -0.1
690,001 + 8658 mRNA_290 0.48 0.1
690,112 - 8658 mRNA_290 0.54 0.4
690,750 + 8658 mRNA_290 0.89 1.4
690,753 + 8658 mRNA_290 0.90 0.0
691,028 + -0.1
691,042 - 0.6
691,126 - 0.6
691,131 - -0.1
691,146 + 1.7
691,293 - -0.5
691,297 - 0.1
691,302 - 1.6
691,308 - 0.1
691,313 + 1.5
691,751 + 8659 mRNA_291 0.49 1.5