Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_268

Experiments: 40 hrs Median Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640868 to 642235 8635 mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642489 to 643919 8636 mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644049 to 645349 8637

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
remove
641,868 + 8635 mRNA_267 0.73 -0.5
642,177 + 0.0
642,303 + 0.1
642,319 - 0.3
642,355 + -0.2
642,419 - 0.3
642,422 + -2.3
642,423 + 1.6
642,427 - -1.5
642,432 + -0.3
642,432 + 1.2
642,581 - 0.1
642,926 + 8636 mRNA_268 0.31 -0.6
643,064 + 8636 mRNA_268 0.40 -0.5
643,463 - 8636 mRNA_268 0.68 -1.1
643,550 - 8636 mRNA_268 0.74 -0.6
643,627 + 8636 mRNA_268 0.80 0.3
643,687 - 8636 mRNA_268 0.84 0.9
643,854 + 0.7
643,862 + 0.3
644,252 + 8637 mRNA_269 0.16 0.9
644,404 - 8637 mRNA_269 0.27 -0.1
644,465 - 8637 mRNA_269 0.32 0.5
644,485 - 8637 mRNA_269 0.34 0.8
644,714 - 8637 mRNA_269 0.51 0.6
644,871 + 8637 mRNA_269 0.63 0.2