Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_253

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_252: 8620 - Hypothetical Protein, at 609608 to 610870 8620 mRNA_253: 8621 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 611030 to 612229 8621 mRNA_254: 8622 - KOG0970 DNA polymerase alpha, catalytic subunit, at 612522 to 613328 8622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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610,292 - 8620 mRNA_252 0.54 0.2
610,525 - 8620 mRNA_252 0.73 1.8
610,659 - 8620 mRNA_252 0.83 0.1
610,665 + 8620 mRNA_252 0.84 0.2
610,668 - 8620 mRNA_252 0.84 -0.0
610,680 + 8620 mRNA_252 0.85 -0.6
610,817 + 1.8
610,817 - 0.2
610,827 + -0.7
610,914 - 0.1
610,958 - 0.4
610,960 - 0.3
610,966 - 0.6
610,979 + 0.5
610,987 + 0.7
611,122 - 0.2
611,134 + -0.0
611,134 - 0.3
611,710 + 8621 mRNA_253 0.57 0.4
611,712 + 8621 mRNA_253 0.57 0.6
611,728 + 8621 mRNA_253 0.58 1.4
611,837 - 8621 mRNA_253 0.67 0.4
612,247 - 0.5
612,288 - 0.6
612,317 + 0.1