Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_246

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_245: 8613 - KOG0256 1-aminocyclopropane-1-carboxylate synthase, and related proteins, at 597112 to 598781 8613 mRNA_246: 8614 - Hypothetical Protein, at 598851 to 601414 8614 mRNA_247: 8615 - K11254 H4 histone H4, at 602212 to 602729 8615

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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598,124 + 8613 mRNA_245 0.61 0.5
598,145 + 8613 mRNA_245 0.62 0.1
598,299 + 8613 mRNA_245 0.71 -1.5
598,386 - 8613 mRNA_245 0.76 0.1
598,939 - 0.3
598,969 - 0.2
598,971 + 0.5
598,974 - -0.2
598,987 - 0.5
598,988 - 0.8
599,002 + 0.2
599,034 + 0.2
599,094 + -0.3
599,130 - 8614 mRNA_246 0.11 1.3
599,148 + 8614 mRNA_246 0.12 0.3
599,153 - 8614 mRNA_246 0.12 0.6
599,153 - 8614 mRNA_246 0.12 -1.0
599,153 - 8614 mRNA_246 0.12 1.2
599,154 + 8614 mRNA_246 0.12 0.1
599,154 + 8614 mRNA_246 0.12 1.1
599,166 + 8614 mRNA_246 0.12 0.5
599,167 - 8614 mRNA_246 0.12 -0.6
599,167 - 8614 mRNA_246 0.12 0.1
599,172 + 8614 mRNA_246 0.13 0.9
599,173 + 8614 mRNA_246 0.13 0.1
599,176 - 8614 mRNA_246 0.13 0.3
599,177 + 8614 mRNA_246 0.13 0.1
599,177 + 8614 mRNA_246 0.13 -1.1
599,178 - 8614 mRNA_246 0.13 0.9
599,183 - 8614 mRNA_246 0.13 -0.5
599,185 - 8614 mRNA_246 0.13 0.3
599,187 + 8614 mRNA_246 0.13 0.2
599,187 - 8614 mRNA_246 0.13 0.7
599,190 + 8614 mRNA_246 0.13 1.5
599,195 - 8614 mRNA_246 0.13 -0.3
599,201 + 8614 mRNA_246 0.14 1.5
599,201 + 8614 mRNA_246 0.14 1.0
599,201 + 8614 mRNA_246 0.14 1.2
599,201 + 8614 mRNA_246 0.14 0.5
599,201 + 8614 mRNA_246 0.14 1.0
599,201 - 8614 mRNA_246 0.14 0.6
599,202 + 8614 mRNA_246 0.14 0.9
599,207 - 8614 mRNA_246 0.14 -0.0
599,211 + 8614 mRNA_246 0.14 -1.3
599,213 + 8614 mRNA_246 0.14 1.1
599,218 + 8614 mRNA_246 0.14 0.0
599,223 + 8614 mRNA_246 0.15 0.4
599,228 - 8614 mRNA_246 0.15 0.1
599,254 + 8614 mRNA_246 0.16 -1.2
599,324 - 8614 mRNA_246 0.18 0.3
599,330 + 8614 mRNA_246 0.19 -0.0
599,333 + 8614 mRNA_246 0.19 -0.1
599,551 + 8614 mRNA_246 0.27 1.7
599,554 - 8614 mRNA_246 0.27 -0.2
599,617 - 8614 mRNA_246 0.30 0.5
599,668 + 8614 mRNA_246 0.32 1.2
599,731 + 8614 mRNA_246 0.34 0.1
599,734 + 8614 mRNA_246 0.34 2.0
599,744 + 8614 mRNA_246 0.35 -0.4
599,747 - 8614 mRNA_246 0.35 -0.7
599,904 + 8614 mRNA_246 0.41 -0.1
600,211 + 8614 mRNA_246 0.53 -0.7
600,781 + 8614 mRNA_246 0.75 0.8
601,092 + 8614 mRNA_246 0.87 -0.4
601,207 + 1.3
601,218 + 0.6
601,337 - 0.1
601,350 + 1.2
601,479 + -1.0
601,497 + -0.3
601,501 + 1.3
601,506 + 0.4
601,506 + -0.4
601,506 + -0.1
601,509 + -0.2
601,513 - -0.0
601,515 + 0.3
601,653 + -0.2
601,779 - 0.7
601,843 - -0.8
601,844 - 0.5
601,845 + 1.6
601,851 - 0.7
601,852 - 0.4
601,852 + -1.1
601,853 + 1.1
601,853 + -0.3
601,860 + 0.4
601,895 - -0.8
601,903 - 0.4
602,006 + 0.4
602,007 + -0.5
602,062 - 0.6
602,164 + 0.3
602,178 + -1.3