Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_203

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570 mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499764 to 500298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500316 to 500871 8572 mRNA_205: 8573 - KOG4267 Predicted membrane protein, at 501072 to 501667 8573

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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498,779 + 8570 mRNA_202 0.81 0.6
498,916 - 8570 mRNA_202 0.85 0.4
498,939 + 8570 mRNA_202 0.86 -0.3
499,071 - 8570 mRNA_202 0.90 0.3
499,072 + 8570 mRNA_202 0.90 1.3
499,074 + 8570 mRNA_202 0.90 0.4
499,082 - 8570 mRNA_202 0.90 0.3
499,085 + 8570 mRNA_202 0.90 1.8
499,186 + 1.6
499,198 + 0.4
499,215 - 0.1
499,221 - 0.6
499,224 - 0.5
499,236 + 0.2
499,238 - 0.3
499,240 + 0.4
499,360 - 0.1
499,369 - 0.2
499,379 + -0.2
499,380 + 0.1
499,382 - 0.6
499,385 + 0.5
499,386 + -0.5
499,500 - 0.9
499,503 + -0.1
499,506 - 0.0
499,516 - 0.4
499,517 - 0.6
499,520 + 0.6
499,523 - -0.1
499,526 + -0.5
499,536 + 1.5
499,538 + 0.7
499,666 - -0.8
499,669 - 0.3
499,813 - -1.3
499,857 + 8571 mRNA_203 0.17 0.3
499,958 + 8571 mRNA_203 0.36 0.1
500,100 + 8571 mRNA_203 0.63 -0.1
500,110 + 8571 mRNA_203 0.65 0.0
500,274 - 0.1
500,401 - 8572 mRNA_204 0.15 0.1
500,425 - 8572 mRNA_204 0.20 0.7
500,538 - 8572 mRNA_204 0.40 0.6
500,549 - 8572 mRNA_204 0.42 0.2
500,550 + 8572 mRNA_204 0.42 -0.0
500,553 - 8572 mRNA_204 0.43 0.3
500,553 - 8572 mRNA_204 0.43 0.3
500,563 - 8572 mRNA_204 0.44 0.3
500,566 - 8572 mRNA_204 0.45 0.6
500,566 - 8572 mRNA_204 0.45 1.7
500,573 - 8572 mRNA_204 0.46 0.1
500,608 - 8572 mRNA_204 0.53 0.1
500,633 + 8572 mRNA_204 0.57 -0.1
500,660 + 8572 mRNA_204 0.62 0.1
500,710 + 8572 mRNA_204 0.71 -0.5
500,712 - 8572 mRNA_204 0.71 -0.0
500,858 - 0.5
500,959 - 0.7
500,963 - -0.0
500,974 + 1.0