Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_136

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_135: 8503 - HMMPfam-Protein kinase domain-PF00069,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 323114 to 325275 8503 mRNA_136: 8504 - HMMPfam-Aldose 1-epimerase-PF01263,SUPERFAMILY--SSF74650, at 326050 to 327675 8504 mRNA_137: 8505 - SUPERFAMILY--SSF53474, at 328204 to 331764 8505

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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325,115 - 0.6
325,115 - 0.0
325,291 - -0.3
325,293 + 1.0
325,300 + 1.6
325,301 - 0.4
325,302 + -0.2
325,312 - 0.8
325,317 + -1.4
325,452 - 0.2
325,594 + 0.3
325,595 - -0.2
325,604 - 0.4
325,921 + 0.4
326,033 + 0.5
326,324 + 8504 mRNA_136 0.17 0.4
326,384 - 8504 mRNA_136 0.21 0.7
326,661 - 8504 mRNA_136 0.38 0.1
326,837 + 8504 mRNA_136 0.48 -0.2
326,915 + 8504 mRNA_136 0.53 0.8
326,937 + 8504 mRNA_136 0.55 0.7
326,970 - 8504 mRNA_136 0.57 1.0
326,997 + 8504 mRNA_136 0.58 -1.0
327,076 + 8504 mRNA_136 0.63 0.2
327,240 - 8504 mRNA_136 0.73 -0.1
327,253 + 8504 mRNA_136 0.74 0.2
327,259 + 8504 mRNA_136 0.74 0.3
327,335 - 8504 mRNA_136 0.79 0.1
327,359 - 8504 mRNA_136 0.81 0.4
327,504 + 8504 mRNA_136 0.89 0.0
327,565 - 0.8
327,648 + 0.3
327,652 - 0.5
327,662 - 1.2
327,663 + 0.5
327,667 + 0.8
327,669 - -0.2
327,686 + -0.0
327,819 - 0.5
327,980 + 0.9
328,075 - 1.2
328,101 - 1.4
328,107 - 0.1
328,112 + -0.4
328,261 - 0.9
328,275 + 0.5
328,280 + 0.9