Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_129

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312995 to 315210 8497 mRNA_130: 8498 - BLAST 60S ribosomal protein L18-B [Termitomyces sp. J132], at 315301 to 316369 8498

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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312,419 - 1.2
312,538 - 0.0
312,542 - 0.9
312,564 - 1.0
312,708 + -0.2
312,811 - 0.5
312,844 - 0.1
312,966 - 0.6
312,983 - 0.4
312,985 + -0.4
312,999 + 0.2
313,176 + 0.6
313,308 + 8497 mRNA_129 0.14 -0.0
313,308 + 8497 mRNA_129 0.14 0.4
313,481 + 8497 mRNA_129 0.22 1.4
313,486 - 8497 mRNA_129 0.22 -1.3
313,593 + 8497 mRNA_129 0.27 -0.2
313,604 + 8497 mRNA_129 0.27 0.6
313,979 + 8497 mRNA_129 0.44 1.4
314,043 + 8497 mRNA_129 0.47 -0.4
314,200 - 8497 mRNA_129 0.54 0.8
315,038 + 0.3
315,182 + 0.2
315,207 - 0.9