Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_128

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_127: 8495 - K11229 BCK1 mitogen-activated protein kinase kinase kinase, at 304252 to 307207 8495 mRNA_128: 8496 - K11592 DICER1, DCR1 endoribonuclease Dicer, at 307596 to 312359 8496 mRNA_129: 8497 - SUPERFAMILY--SSF56112, at 312995 to 315210 8497

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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306,834 - 8495 mRNA_127 0.87 0.3
306,877 - 8495 mRNA_127 0.89 -0.3
306,913 + 0.1
307,185 - -0.2
307,205 - 0.4
307,285 + 1.7
307,305 - 1.8
307,482 + 0.5
307,487 + -0.5
307,515 + -1.1
307,600 - 0.7
307,629 + 0.8
307,634 + -0.7
307,719 + 1.5
307,785 - 0.1
307,886 - 0.0
308,051 + 1.4
308,064 - 0.3
308,146 + 8496 mRNA_128 0.12 -0.9
308,397 + 8496 mRNA_128 0.17 0.3
308,496 + 8496 mRNA_128 0.19 0.7
308,539 + 8496 mRNA_128 0.20 0.7
308,683 + 8496 mRNA_128 0.23 1.9
308,767 - 8496 mRNA_128 0.25 -0.0
308,779 + 8496 mRNA_128 0.25 0.8
308,896 - 8496 mRNA_128 0.27 0.1
308,952 + 8496 mRNA_128 0.28 0.3
308,997 - 8496 mRNA_128 0.29 -0.3
309,133 + 8496 mRNA_128 0.32 0.3
309,223 - 8496 mRNA_128 0.34 0.9
309,226 + 8496 mRNA_128 0.34 0.1
309,382 - 8496 mRNA_128 0.37 0.2
309,531 + 8496 mRNA_128 0.41 1.3
309,681 + 8496 mRNA_128 0.44 1.0
309,702 + 8496 mRNA_128 0.44 0.7
309,804 + 8496 mRNA_128 0.46 -1.1
309,819 - 8496 mRNA_128 0.47 0.4
309,952 - 8496 mRNA_128 0.49 0.2
310,080 - 8496 mRNA_128 0.52 0.6
310,098 - 8496 mRNA_128 0.53 0.6
310,098 + 8496 mRNA_128 0.53 0.3
310,236 + 8496 mRNA_128 0.55 0.3
310,239 - 8496 mRNA_128 0.55 0.7
310,249 - 8496 mRNA_128 0.56 -0.4
310,281 - 8496 mRNA_128 0.56 0.0
310,386 + 8496 mRNA_128 0.59 0.8
310,518 + 8496 mRNA_128 0.61 0.9
310,671 + 8496 mRNA_128 0.65 0.1
310,722 + 8496 mRNA_128 0.66 0.9
310,733 + 8496 mRNA_128 0.66 0.9
310,997 + 8496 mRNA_128 0.71 1.2
311,103 - 8496 mRNA_128 0.74 0.3
311,253 - 8496 mRNA_128 0.77 0.4
311,442 + 8496 mRNA_128 0.81 0.0
311,702 - 8496 mRNA_128 0.86 -1.0
311,728 + 8496 mRNA_128 0.87 -0.3
312,419 - 1.2
312,538 - 0.0
312,542 - 0.9
312,564 - 1.0
312,708 + -0.2
312,811 - 0.5
312,844 - 0.1
312,966 - 0.6
312,983 - 0.4
312,985 + -0.4
312,999 + 0.2
313,176 + 0.6
313,308 + 8497 mRNA_129 0.14 -0.0
313,308 + 8497 mRNA_129 0.14 0.4