Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_114

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_112: 8480 - K10899 RECQL ATP-dependent DNA helicase Q1, at 264157 to 266973 8480 mRNA_113: 8481 - KOG0209 P-type ATPase, at 267088 to 267405 8481 mRNA_114: 8482 - K10862 TDP1 tyrosyl-DNA phosphodiesterase 1, at 267754 to 270066 8482 mRNA_115: 8483 - K14950 ATP13A1 cation-transporting ATPase 13A1, at 270395 to 274744 8483

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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266,777 + 0.9
266,894 - -0.0
266,900 + -0.1
266,900 + 0.2
267,130 - 8481 mRNA_113 0.13 0.1
267,140 - 8481 mRNA_113 0.16 -0.9
267,314 - 8481 mRNA_113 0.71 0.7
267,332 + 8481 mRNA_113 0.77 -0.6
267,340 - 8481 mRNA_113 0.79 0.5
267,482 + 0.8
267,499 + 0.4
267,885 + -1.2
267,886 - -0.8
268,053 - 8482 mRNA_114 0.13 0.6
268,059 + 8482 mRNA_114 0.13 0.4
268,554 + 8482 mRNA_114 0.35 0.8
268,613 - 8482 mRNA_114 0.37 1.2
268,637 - 8482 mRNA_114 0.38 -0.6
268,643 + 8482 mRNA_114 0.38 1.3
268,648 - 8482 mRNA_114 0.39 0.4
268,779 - 8482 mRNA_114 0.44 1.2
268,785 + 8482 mRNA_114 0.45 0.8
268,794 + 8482 mRNA_114 0.45 -0.6
268,903 - 8482 mRNA_114 0.50 0.4
268,918 + 8482 mRNA_114 0.50 0.1
269,061 - 8482 mRNA_114 0.57 -0.1
269,235 - 8482 mRNA_114 0.64 0.8
269,243 - 8482 mRNA_114 0.64 0.4
269,395 + 8482 mRNA_114 0.71 1.1
269,467 + 8482 mRNA_114 0.74 0.1
269,797 - 8482 mRNA_114 0.88 1.0
269,885 - 0.2
269,917 - 0.7
270,081 - -0.2
270,083 - 1.4
270,230 + -1.9
270,245 + -0.0
270,248 + -0.2
270,256 + -0.5