Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_86

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_85: 8453 - BLAST glutamine synthetase [Sanghuangporus baumii], at 203010 to 204516 8453 mRNA_86: 8454 - K01452 E3.5.1.41 chitin deacetylase, at 204818 to 206685 8454 mRNA_87: 8455 - BLAST HAP1, N-terminal [Xanthophyllomyces dendrorhous], at 207025 to 210193 8455

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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204,184 - 8453 mRNA_85 0.78 0.4
204,287 + 8453 mRNA_85 0.85 0.2
204,288 - 8453 mRNA_85 0.85 -0.0
204,696 - 1.3
204,907 - 0.6
205,019 - 8454 mRNA_86 0.11 -0.2
205,273 - 8454 mRNA_86 0.24 1.2
205,322 + 8454 mRNA_86 0.27 0.1
206,088 + 8454 mRNA_86 0.68 0.3
206,167 - 8454 mRNA_86 0.72 1.2
206,167 - 8454 mRNA_86 0.72 -0.5
206,171 + 8454 mRNA_86 0.72 1.7
206,231 - 8454 mRNA_86 0.76 -0.5
206,446 - 8454 mRNA_86 0.87 -0.6
206,466 - 8454 mRNA_86 0.88 -2.2
206,469 + 8454 mRNA_86 0.88 0.7
206,642 + 0.8
206,790 + 0.6
206,883 - -0.2