Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_54

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_53: 8421 - K03014 RPB6, POLR2F DNA-directed RNA polymerases I, II, and III subunit RPABC2, at 126911 to 127593 8421 mRNA_54: 8422 - KOG1505 Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases, at 128047 to 129356 8422 mRNA_55: 8423 - HMMPfam-Endonuclease/Exonuclease/phosphatase family-PF03372,SUPERFAMILY--SSF56219, at 129465 to 130938 8423

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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127,637 + 0.8
127,716 - 2.1
127,733 - 0.5
127,779 - -0.1
127,892 + 0.6
127,908 - -1.0
127,913 + 1.5
128,042 + 0.2
128,185 + 8422 mRNA_54 0.11 0.5
128,195 + 8422 mRNA_54 0.11 -0.3
128,199 + 8422 mRNA_54 0.12 -0.6
128,340 - 8422 mRNA_54 0.22 2.5
128,484 - 8422 mRNA_54 0.33 1.4
128,488 - 8422 mRNA_54 0.34 0.3
128,618 - 8422 mRNA_54 0.44 -0.6
128,981 + 8422 mRNA_54 0.71 -1.4
129,214 + 8422 mRNA_54 0.89 0.2
129,267 - 0.4
129,346 - 1.2
129,406 + 0.1