Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_43

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_42: 8410 - K09494 CCT2 T-complex protein 1 subunit beta, at 101957 to 104570 8410 mRNA_43: 8411 - K05609 UCHL3, YUH1 ubiquitin carboxyl-terminal hydrolase L3, at 104762 to 105972 8411 mRNA_44: 8412 - Hypothetical Protein, at 106197 to 108340 8412

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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104,618 - 0.7
104,620 - -0.3
104,625 - -2.5
104,628 + 0.2
104,631 - 0.3
104,819 + 0.2
104,833 + -0.6
104,833 + 0.2
104,833 + 0.4
104,833 + -0.3
104,836 - -0.4
104,837 + 0.1
104,918 - 8411 mRNA_43 0.13 0.8
104,941 + 8411 mRNA_43 0.15 0.4
105,039 - 8411 mRNA_43 0.23 -0.6
105,079 - 8411 mRNA_43 0.26 0.0
105,356 + 8411 mRNA_43 0.49 0.5
105,361 + 8411 mRNA_43 0.49 -0.0
105,563 + 8411 mRNA_43 0.66 0.6
105,676 - 8411 mRNA_43 0.75 0.5
105,947 - 1.1
105,959 - -1.5
105,986 + 1.4
106,088 + 0.3
106,106 - -0.4
106,300 - -0.7
106,573 + 8412 mRNA_44 0.18 -0.8
106,593 - 8412 mRNA_44 0.18 -0.2
106,597 - 8412 mRNA_44 0.19 0.8
106,652 + 8412 mRNA_44 0.21 -0.1
106,796 - 8412 mRNA_44 0.28 0.3