Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_16

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_15: 8383 - K02321 POLA2 DNA polymerase alpha subunit B, at 39313 to 41292 8383 mRNA_16: 8384 - K03407 cheA two-component system, chemotaxis family, sensor kinase CheA, at 41535 to 45882 8384

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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41,523 - -0.9
41,618 - 1.5
41,620 + 0.8
41,697 - 0.5
41,830 + -0.3
41,854 - -1.0
41,863 + -0.1
42,189 + 8384 mRNA_16 0.15 2.1
42,340 - 8384 mRNA_16 0.19 1.2
42,375 - 8384 mRNA_16 0.19 -0.4
42,431 + 8384 mRNA_16 0.21 0.4
42,449 + 8384 mRNA_16 0.21 -0.5
42,479 + 8384 mRNA_16 0.22 0.8
42,598 - 8384 mRNA_16 0.24 0.3
42,602 - 8384 mRNA_16 0.25 1.8
42,604 - 8384 mRNA_16 0.25 0.7
42,613 - 8384 mRNA_16 0.25 1.5
42,660 + 8384 mRNA_16 0.26 0.3
42,785 + 8384 mRNA_16 0.29 0.6
42,829 + 8384 mRNA_16 0.30 0.7
42,912 + 8384 mRNA_16 0.32 -0.1
42,916 - 8384 mRNA_16 0.32 1.3
43,043 + 8384 mRNA_16 0.35 1.0
43,046 - 8384 mRNA_16 0.35 0.8
43,055 + 8384 mRNA_16 0.35 -1.2
43,082 + 8384 mRNA_16 0.36 -0.4
43,091 + 8384 mRNA_16 0.36 0.3
43,459 - 8384 mRNA_16 0.44 0.2
43,464 - 8384 mRNA_16 0.44 -0.3
43,776 - 8384 mRNA_16 0.52 0.4
43,803 - 8384 mRNA_16 0.52 0.8
43,804 + 8384 mRNA_16 0.52 0.0
43,804 - 8384 mRNA_16 0.52 0.1
43,815 + 8384 mRNA_16 0.52 0.4
43,816 + 8384 mRNA_16 0.52 -0.2
43,816 + 8384 mRNA_16 0.52 0.4
43,882 + 8384 mRNA_16 0.54 0.5
43,929 + 8384 mRNA_16 0.55 0.7
43,929 + 8384 mRNA_16 0.55 -0.4
43,937 + 8384 mRNA_16 0.55 0.5
43,954 - 8384 mRNA_16 0.56 1.6
43,960 + 8384 mRNA_16 0.56 0.3
43,962 + 8384 mRNA_16 0.56 1.1
43,963 + 8384 mRNA_16 0.56 0.6
43,986 + 8384 mRNA_16 0.56 0.6
44,066 - 8384 mRNA_16 0.58 0.0
44,142 - 8384 mRNA_16 0.60 -0.2
44,197 + 8384 mRNA_16 0.61 0.4
44,332 - 8384 mRNA_16 0.64 1.5
44,390 - 8384 mRNA_16 0.66 -0.8
44,476 - 8384 mRNA_16 0.68 0.0
44,522 + 8384 mRNA_16 0.69 0.3
44,543 + 8384 mRNA_16 0.69 -0.2
44,633 + 8384 mRNA_16 0.71 0.5
44,699 - 8384 mRNA_16 0.73 1.5
44,712 + 8384 mRNA_16 0.73 0.6
44,812 - 8384 mRNA_16 0.75 -0.6
44,826 - 8384 mRNA_16 0.76 0.4
44,979 + 8384 mRNA_16 0.79 -0.3
44,979 + 8384 mRNA_16 0.79 0.3
45,062 - 8384 mRNA_16 0.81 1.0
45,113 + 8384 mRNA_16 0.82 -0.2
45,142 - 8384 mRNA_16 0.83 0.1
45,678 + 0.2
45,713 + 0.8
45,813 + -0.5
45,822 - -0.5
45,833 - 0.5
45,845 - 1.4
45,967 - 1.8
45,981 + 0.3
45,990 - 1.3
45,992 + 0.6
45,994 - -0.2
45,995 + 0.9
45,999 + -0.0
46,003 + 1.5
46,023 + -0.6
46,027 + 1.9
46,040 + -0.4
46,040 + 1.1
46,054 - -0.6
46,101 - -0.4
46,213 - 0.3
46,221 - 0.4
46,254 + 1.4
46,266 + 0.6
46,352 + 1.6
46,354 + 1.0
46,357 + -0.5
46,384 + 0.2
46,416 + 1.8
46,425 - 0.6
46,482 - 0.1
46,527 - -0.6
46,645 - -0.7
46,812 - 2.2
46,851 + 0.3