Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_13

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_12: 8380 - K12757 MYL12 myosin regulatory light chain 12, at 32509 to 33351 8380 mRNA_13: 8381 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 33714 to 35045 8381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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32,719 + 8380 mRNA_12 0.25 0.3
32,723 - 8380 mRNA_12 0.25 0.3
32,952 + 8380 mRNA_12 0.53 -0.9
32,975 + 8380 mRNA_12 0.55 0.7
33,006 + 8380 mRNA_12 0.59 0.4
33,354 + -0.7
33,828 - 0.2
33,901 + 8381 mRNA_13 0.14 -0.0
34,328 - 8381 mRNA_13 0.46 0.4
34,607 - 8381 mRNA_13 0.67 1.7
34,610 + 8381 mRNA_13 0.67 0.1
34,617 + 8381 mRNA_13 0.68 0.8
34,748 - 8381 mRNA_13 0.78 1.0
34,770 + 8381 mRNA_13 0.79 0.9
34,773 + 8381 mRNA_13 0.80 -1.1
34,776 + 8381 mRNA_13 0.80 1.1
34,891 - 8381 mRNA_13 0.88 -0.5
34,898 - 8381 mRNA_13 0.89 0.4
34,918 - 0.4
34,921 - 1.5
34,926 + -1.1
35,026 - 0.2
35,030 - 1.5
35,033 - 1.2
35,033 - 2.5
35,063 + 1.3
35,071 - -0.1
35,074 + 0.9
35,078 + -0.2
35,084 - 0.4
35,189 - 1.5
35,209 - -0.1
35,212 - 0.5
35,215 - 1.4
35,222 - -0.3
35,223 + 0.1
35,226 - 0.1
35,233 + 0.7
35,274 + 0.6
35,338 - 0.6
35,340 - -0.4
35,351 - 1.0
35,367 + -0.2
35,370 + -0.1
35,388 + -0.5
35,511 - 0.8
35,520 - 0.8
35,541 + 0.5
35,545 + 0.1
35,658 - -1.2
35,660 - 0.1
35,824 - -0.4
35,850 + 0.5