Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370 mRNA_3: 8371 - K15161 CCNC, SSN8 cyclin C, at 8155 to 10023 8371 mRNA_4: 8372 - K00772 mtaP, MTAP 5'-methylthioadenosine phosphorylase, at 10225 to 11839 8372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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7,817 - 0.6
7,865 + 1.8
7,991 + 0.0
8,148 - -0.9
8,150 - 0.9
8,205 - 0.6
8,285 + 1.4
8,396 + 8371 mRNA_3 0.13 -0.9
8,694 - 8371 mRNA_3 0.29 -0.9
8,707 + 8371 mRNA_3 0.30 -0.6
9,140 - 8371 mRNA_3 0.53 0.4
9,147 - 8371 mRNA_3 0.53 0.8
9,290 + 8371 mRNA_3 0.61 0.2
9,293 - 8371 mRNA_3 0.61 0.4
9,293 - 8371 mRNA_3 0.61 1.1
9,321 + 8371 mRNA_3 0.62 0.6
9,595 - 8371 mRNA_3 0.77 0.4
9,699 + 8371 mRNA_3 0.83 0.1
9,699 + 8371 mRNA_3 0.83 0.0
9,864 - -0.4
9,885 + -0.2
9,887 - 0.5
9,889 + 0.0
9,890 - -0.6
9,920 + 0.4
9,921 + 0.6
9,946 - 0.2
9,986 + -0.0
9,998 - 0.1
10,003 - 0.1
10,039 - -0.0
10,045 - 0.0
10,059 + 0.2
10,066 + -0.9
10,067 + 0.3
10,071 + 0.8
10,074 - 0.2
10,076 - 0.2
10,095 + -0.2
10,120 + 0.1
10,123 + -0.4
10,197 + 0.5
10,214 + 0.5
10,229 + 1.1
10,230 - -0.2
10,241 + 0.7
10,241 + -0.1
10,357 - -0.1
10,521 - 8372 mRNA_4 0.18 -0.6
10,663 + 8372 mRNA_4 0.27 -0.4
10,915 - 8372 mRNA_4 0.43 0.1