Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8417

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8416: 16784 - BLAST Protein byr4 [Hypsizygus marmoreus], at 1167455 to 1171070 16784 mRNA_8417: 16785 - Hypothetical Protein, at 1171462 to 1173303 16785 mRNA_8418: 16786 - HMMPfam-Cgr1 family-PF03879, at 1174029 to 1174652 16786

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,170,481 - 16784 mRNA_8416 0.84 0.1
1,170,517 + 16784 mRNA_8416 0.85 -0.3
1,170,517 - 16784 mRNA_8416 0.85 0.4
1,170,594 - 16784 mRNA_8416 0.87 0.9
1,170,594 - 16784 mRNA_8416 0.87 0.2
1,170,643 - 16784 mRNA_8416 0.88 -0.2
1,170,657 - 16784 mRNA_8416 0.89 0.9
1,170,695 + 16784 mRNA_8416 0.90 0.4
1,170,808 - -1.3
1,170,828 - -0.9
1,170,987 - 0.2
1,171,002 - -0.2
1,171,084 - 0.9
1,171,119 + 0.3
1,171,143 + 0.3
1,171,154 + 0.2
1,171,179 - -1.6
1,171,194 - -0.7
1,171,201 - -0.3
1,171,543 + 0.0
1,171,549 + 0.3
1,171,552 - 0.4
1,171,562 + -0.2
1,171,684 - 16785 mRNA_8417 0.12 0.2
1,172,032 + 16785 mRNA_8417 0.31 -0.1
1,172,078 - 16785 mRNA_8417 0.33 0.5
1,172,241 - 16785 mRNA_8417 0.42 2.2
1,172,270 + 16785 mRNA_8417 0.44 0.2
1,172,272 + 16785 mRNA_8417 0.44 -0.1
1,172,318 - 16785 mRNA_8417 0.46 -0.2
1,172,383 - 16785 mRNA_8417 0.50 -0.7
1,172,396 - 16785 mRNA_8417 0.51 -0.4
1,172,471 - 16785 mRNA_8417 0.55 0.1
1,172,527 - 16785 mRNA_8417 0.58 0.4
1,172,536 + 16785 mRNA_8417 0.58 0.3
1,172,591 - 16785 mRNA_8417 0.61 0.7
1,172,689 - 16785 mRNA_8417 0.67 0.7
1,172,729 + 16785 mRNA_8417 0.69 -1.4
1,172,758 + 16785 mRNA_8417 0.70 -0.7
1,172,766 + 16785 mRNA_8417 0.71 -0.9
1,172,808 + 16785 mRNA_8417 0.73 -0.4
1,172,819 + 16785 mRNA_8417 0.74 1.0
1,172,872 + 16785 mRNA_8417 0.77 0.3
1,173,146 + -0.2
1,173,241 + 0.6
1,173,301 + -0.5
1,173,301 + 0.2
1,173,428 + 0.5
1,173,468 + 0.1
1,173,591 - 0.8
1,173,823 + 1.2
1,173,910 + 0.4