Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8339

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8339: 16707 - K06180 rluD 23S rRNA pseudouridine1911/1915/1917 synthase, at 972438 to 973571 16707 mRNA_8340: 16708 - K03254 EIF3A translation initiation factor 3 subunit A, at 973687 to 977357 16708

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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971,660 - 0.5
971,671 + 0.8
971,943 - 0.8
972,119 + 0.5
972,192 - -0.1
972,205 + 0.4
972,232 - -2.6
972,252 - -1.3
972,283 - 0.1
972,296 + 0.4
972,371 + 0.5
972,384 - 0.8
972,568 + 16707 mRNA_8339 0.11 2.4
972,684 + 16707 mRNA_8339 0.22 0.3
972,711 + 16707 mRNA_8339 0.24 0.3
972,715 + 16707 mRNA_8339 0.24 -2.3
972,717 + 16707 mRNA_8339 0.25 -0.1
972,719 + 16707 mRNA_8339 0.25 0.1
972,725 + 16707 mRNA_8339 0.25 -0.3
972,838 + 16707 mRNA_8339 0.35 0.9
972,891 + 16707 mRNA_8339 0.40 0.6
973,193 + 16707 mRNA_8339 0.67 0.9
973,194 - 16707 mRNA_8339 0.67 0.0
973,195 - 16707 mRNA_8339 0.67 -0.6
973,461 - -0.1
973,461 - 0.8
973,489 + -0.3
973,620 - 1.0
973,626 + -0.0
973,635 + 0.4
973,638 - 1.0
973,640 + 0.6
973,648 + -0.1
973,653 - 1.3
973,658 + -0.5