Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8293

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8292: 16660 - HMMPfam-OHCU decarboxylase-PF09349,SUPERFAMILY--SSF158694, at 864726 to 865561 16660 mRNA_8293: 16661 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339, at 865837 to 868084 16661 mRNA_8294: 16662 - Hypothetical Protein, at 869009 to 869206 16662

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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864,864 + 16660 mRNA_8292 0.17 -0.5
864,867 - 16660 mRNA_8292 0.17 0.9
864,870 - 16660 mRNA_8292 0.17 0.3
864,876 - 16660 mRNA_8292 0.18 0.0
864,898 + 16660 mRNA_8292 0.21 0.4
864,981 + 16660 mRNA_8292 0.31 0.2
865,030 + 16660 mRNA_8292 0.36 -0.9
865,094 + 16660 mRNA_8292 0.44 1.7
865,297 + 16660 mRNA_8292 0.68 -0.9
865,338 + 16660 mRNA_8292 0.73 1.7
865,417 + 16660 mRNA_8292 0.83 -0.6
865,727 - -0.5
865,881 + 0.2
865,904 + 0.2
866,010 - -0.2
866,010 - -0.3
866,756 + 16661 mRNA_8293 0.41 0.3
867,202 + 16661 mRNA_8293 0.61 -0.6
867,447 + 16661 mRNA_8293 0.72 0.8
867,642 - 16661 mRNA_8293 0.80 0.1
867,770 + 16661 mRNA_8293 0.86 -0.1
867,931 - 0.1
867,942 - 0.7
867,969 + 0.5
867,980 + 0.6
868,106 - 0.1
868,114 - -0.2
868,225 - 1.2
868,226 + -0.5
868,236 + 1.2
868,238 + -0.0
868,254 - 0.8
868,258 - 0.4
868,265 - 1.6
868,279 + -0.1
868,301 + 0.8
868,303 - 0.6
868,304 + -0.8
868,423 - 0.3
868,426 - -0.1
868,444 - 0.5
868,468 - 0.1
868,536 - 0.7
868,542 + -0.4
868,567 + 0.1
868,572 + 0.5
868,662 + 0.4
868,687 - 0.4
868,711 - 0.4
868,840 - 1.3
868,972 + -0.7
869,045 + 16662 mRNA_8294 0.18 0.1
869,061 - 16662 mRNA_8294 0.26 1.9