Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8284

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8283: 16651 - HMMPfam-Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region-PF00645,PRINTS-Histone H5 signature-PR00624,ProSiteProfiles-Poly(ADP-ribose) polymerase zinc finger domain profile.-PS50064,SUPERFAMILY--SSF57716, at 837568 to 839019 16651 mRNA_8284: 16652 - K07023 K07023 putative hydrolases of HD superfamily, at 839428 to 840649 16652 mRNA_8285: 16653 - HMMPfam-PH domain-PF00169,ProSiteProfiles-PH domain profile.-PS50003,SMART-Pleckstrin homology domain.-SM00233,SUPERFAMILY--SSF50729, at 841143 to 845451 16653

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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838,633 - 16651 mRNA_8283 0.73 -0.1
838,689 - 16651 mRNA_8283 0.77 -2.1
838,704 - 16651 mRNA_8283 0.78 0.2
838,990 + -1.0
839,000 + 0.8
839,147 + 0.4
839,167 + 0.7
839,183 - 0.9
839,317 + 1.1
839,434 - -0.1
839,447 - 0.9
839,454 - 0.7
839,456 - -0.0
839,543 - 0.2
839,584 - 16652 mRNA_8284 0.13 0.6
839,725 + 16652 mRNA_8284 0.24 -0.7
839,921 - 16652 mRNA_8284 0.40 -0.3
840,449 + 16652 mRNA_8284 0.84 1.3
840,625 - 0.3
840,633 - 0.6