Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8239

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8238: 16606 - KOG2551 Phospholipase/carboxyhydrolase, at 736874 to 737919 16606 mRNA_8239: 16607 - K00101 E1.1.2.3, lldD L-lactate dehydrogenase (cytochrome), at 738207 to 740675 16607 mRNA_8240: 16608 - K14350 AADACL2 arylacetamide deacetylase-like 2, at 740976 to 744696 16608

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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737,317 + 16606 mRNA_8238 0.42 -0.2
737,472 + 16606 mRNA_8238 0.57 -0.5
737,573 - 16606 mRNA_8238 0.67 0.7
737,618 + 16606 mRNA_8238 0.71 -0.1
737,725 - 16606 mRNA_8238 0.81 -0.7
737,832 - -0.5
737,838 + -0.1
737,849 - 0.7
737,854 + 0.2
737,857 - -0.8
737,868 + 0.1
737,900 + 0.5
737,902 - 1.0
737,957 + -0.5
737,975 - -0.9
737,976 - 0.5
737,979 + 0.2
737,987 + 0.4
737,989 - 0.3
737,994 - 1.0
738,011 + 0.1
738,016 + 0.3
738,027 - 1.1
738,045 + 0.2
738,048 - 0.1
738,050 - 0.8
738,054 + 0.5
738,072 - 0.8
738,135 + 1.7
738,174 - 0.1
738,179 + -1.5
738,204 - 0.3
738,207 + -0.5
738,215 + 0.3
738,337 + -0.1
738,473 + 16607 mRNA_8239 0.11 0.3
738,488 + 16607 mRNA_8239 0.11 0.6
738,618 - 16607 mRNA_8239 0.17 -0.1
739,050 - 16607 mRNA_8239 0.34 1.4
739,210 + 16607 mRNA_8239 0.41 0.4
739,229 - 16607 mRNA_8239 0.41 -0.1
739,343 + 16607 mRNA_8239 0.46 0.0
739,930 - 16607 mRNA_8239 0.70 0.9
740,086 - 16607 mRNA_8239 0.76 0.4
740,230 + 16607 mRNA_8239 0.82 0.4
740,522 - 1.2
740,662 + -0.4
740,685 + 0.4
740,809 - 1.3
740,811 - -1.1
740,819 - 0.9
740,834 - 1.2
740,946 + 0.2
740,984 - -2.0
741,123 + 0.7
741,435 - 16608 mRNA_8240 0.12 -0.3