Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8229

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8228: 16596 - K11648 SMARCB1, SNF5, INI1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, at 716200 to 719512 16596 mRNA_8229: 16597 - K04630 GNAI guanine nucleotide-binding protein G(i) subunit alpha, at 720080 to 721710 16597 mRNA_8230: 16598 - K09668 LARGE glycosyltransferase-like protein LARGE, at 722627 to 724673 16598

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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719,217 - 0.3
719,536 - 0.4
719,644 - -0.0
719,645 - 2.0
719,647 - 0.8
719,647 - -0.8
719,669 + 0.8
719,800 + 0.4
719,939 + -0.2
719,939 + -0.6
720,213 - -0.3
720,218 - -0.1
720,236 - 0.8
720,522 - 16597 mRNA_8229 0.27 0.1
720,539 + 16597 mRNA_8229 0.28 0.5
720,655 + 16597 mRNA_8229 0.35 0.3
720,741 + 16597 mRNA_8229 0.41 0.5
720,955 + 16597 mRNA_8229 0.54 -0.3
720,998 + 16597 mRNA_8229 0.56 0.2
721,074 - 16597 mRNA_8229 0.61 -0.5
721,350 + 16597 mRNA_8229 0.78 0.8
721,353 - 16597 mRNA_8229 0.78 -0.2
721,485 + 16597 mRNA_8229 0.86 0.3
721,755 - -0.8
721,764 + -0.2
721,789 + -0.7
721,790 - -0.3
721,798 + -1.1
721,798 + 0.3
721,800 + 1.0
721,803 - -0.1
721,810 - 0.5
721,817 + 1.1
721,886 + 1.1
721,890 - -0.2
721,942 - -0.7
721,949 + 1.2
721,955 - 0.0
721,960 - 0.5
721,967 + 0.1
721,977 + -0.0
722,068 - 1.0
722,076 + -0.6
722,078 + -0.1
722,079 + 1.1
722,079 + 0.4
722,092 - 0.7
722,098 - -0.2
722,099 + -0.0
722,099 - -0.6
722,107 - 1.4
722,109 - 1.0
722,115 - 0.4
722,116 + 0.9
722,116 + 1.6
722,154 - 0.8
722,156 + 0.4
722,156 - 0.9
722,157 + -0.2
722,173 - 0.7
722,178 + 2.2
722,179 + 0.6
722,183 + -0.0
722,184 + 0.2
722,184 + -0.5
722,187 - 0.1
722,189 + 1.5
722,194 - 0.1
722,197 + 0.4
722,198 + 0.2
722,201 + 0.9
722,204 - -0.2
722,212 - 1.0
722,222 - 0.4
722,225 - 0.8
722,238 + 0.4
722,265 + 0.3
722,270 - 0.8
722,278 - -0.1
722,285 + 1.3
722,290 + 0.2
722,310 - -0.5
722,346 + 1.3
722,384 - 0.0
722,397 + 1.1
722,411 - 0.0
722,412 + 1.3
722,420 - 0.8
722,421 + 0.5
722,431 + -0.0
722,432 + 0.3
722,434 - 1.1