Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8217

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8216: 16584 - K14376 PAP poly(A) polymerase, at 686292 to 689011 16584 mRNA_8217: 16585 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 689708 to 696121 16585

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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689,088 - 1.1
689,092 + 0.4
689,098 + 1.0
689,209 - 0.7
689,219 - 0.3
689,240 + 0.3
689,250 + 0.5
689,256 - 1.0
689,383 - 0.3
689,384 + 1.8
690,286 + 0.6
690,556 + 16585 mRNA_8217 0.13 0.0
690,658 - 16585 mRNA_8217 0.15 0.3
690,706 + 16585 mRNA_8217 0.16 -0.2
690,706 + 16585 mRNA_8217 0.16 -0.6
691,462 - 16585 mRNA_8217 0.27 -0.4
691,471 - 16585 mRNA_8217 0.27 1.0
692,026 + 16585 mRNA_8217 0.36 1.2
692,326 - 16585 mRNA_8217 0.41 0.1
692,599 - 16585 mRNA_8217 0.45 0.6
692,752 + 16585 mRNA_8217 0.47 1.6
693,354 - 16585 mRNA_8217 0.57 0.2
693,793 - 16585 mRNA_8217 0.64 0.5
694,150 - 16585 mRNA_8217 0.69 2.3
694,345 - 16585 mRNA_8217 0.72 0.7
694,401 - 16585 mRNA_8217 0.73 0.3
694,527 + 16585 mRNA_8217 0.75 0.4
694,802 - 16585 mRNA_8217 0.79 -0.5
694,826 + 16585 mRNA_8217 0.80 -1.4
694,962 + 16585 mRNA_8217 0.82 -0.4
695,011 + 16585 mRNA_8217 0.83 -0.5
695,104 - 16585 mRNA_8217 0.84 0.9
695,254 + 16585 mRNA_8217 0.86 -0.0
695,427 - 16585 mRNA_8217 0.89 0.0
695,551 + -0.0
695,557 - 0.6
695,560 + 0.3
695,570 - -0.8
695,670 + 0.6
696,031 + -0.0
696,032 - 0.5
696,059 + -0.4
696,060 - 1.2
696,138 + 1.4
696,300 + -0.3
696,356 - -0.2
696,412 - 0.6
696,453 + 3.8
696,607 + -0.4
696,761 - 1.3
696,886 - -0.7
697,032 - 0.3
697,033 + 1.1