Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8110

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8109: 16477 - K00679 E2.3.1.158 phospholipid-diacylglycerol acyltransferase, at 434477 to 437050 16477 mRNA_8110: 16478 - HMMPfam-G protein-coupled glucose receptor regulating Gpa2-PF11710,SUPERFAMILY--SSF81321, at 437598 to 439156 16478 mRNA_8111: 16479 - HMMPfam-CTD kinase subunit gamma CTK3-PF12243,HMMPfam-CTD kinase subunit gamma CTK3 C-terminus-PF12350,ProSiteProfiles-CID domain profile.-PS51391, at 439350 to 440597 16479

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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436,599 + 16477 mRNA_8109 0.82 -0.7
436,722 + 16477 mRNA_8109 0.87 1.0
436,865 - 0.6
436,953 - 0.3
436,962 - 1.0
437,009 - -0.2
437,051 + 0.8
437,068 + -0.5
437,140 - -0.4
437,167 - 0.7
437,182 + 0.0
437,185 + 0.4
437,190 - 2.1
437,191 + 0.1
437,195 + 0.3
437,203 + 0.9
437,204 - 0.5
437,207 - 0.2
437,208 - -0.1
437,210 - 0.2
437,213 - 0.6
437,238 - -0.8
437,253 + 1.3
437,272 - 0.3
437,278 + 0.3
437,280 + -0.1
437,298 - -0.1
437,306 + 0.7
437,309 + 1.5
437,310 + 0.2
437,337 + 1.4
437,338 - 0.0
437,365 + 0.4
437,379 + -0.3
437,382 + -0.2
437,382 - 0.7
437,390 - -0.0
437,395 + 0.2
437,395 - 0.6
437,407 - 0.6
437,413 + 0.3
437,421 - -0.0
437,423 - 0.5
437,425 + 1.6
437,426 + 0.0
437,428 + 0.5
437,470 + -0.4
437,474 - 0.4
437,477 + 0.2
437,483 - 0.4
437,485 - -0.8
437,490 + 0.4
437,496 + 1.5
437,500 + 0.2
437,508 + 0.0
437,512 + 1.6
437,516 + 0.7
437,518 + 0.3
437,521 + -0.3
437,527 - 0.4
437,529 - 1.6
437,533 + 0.0
437,539 - -0.4
437,539 + 1.1
437,546 + -0.1
437,570 - 0.1
437,594 + 0.1
437,676 - 2.0
437,688 + 0.9
437,737 - 0.5
437,830 + 16478 mRNA_8110 0.15 -0.1
437,834 + 16478 mRNA_8110 0.15 0.2
437,976 - 16478 mRNA_8110 0.24 0.3
437,997 - 16478 mRNA_8110 0.26 -0.4
438,154 - 16478 mRNA_8110 0.36 0.7
438,327 - 16478 mRNA_8110 0.47 0.8
439,177 - 0.6
439,283 - -0.3
439,298 + 1.3