Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8094

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8093: 16461 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 402120 to 403069 16461 mRNA_8094: 16462 - K10775 PAL phenylalanine ammonia-lyase, at 403260 to 405803 16462 mRNA_8095: 16463 - K17508 PTC7, PPTC7 protein phosphatase PTC7, at 406311 to 408343 16463

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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402,312 - 16461 mRNA_8093 0.20 0.4
402,367 - 16461 mRNA_8093 0.26 0.7
402,448 - 16461 mRNA_8093 0.35 -0.1
402,596 - 16461 mRNA_8093 0.50 0.5
402,763 - 16461 mRNA_8093 0.68 0.8
402,810 + 16461 mRNA_8093 0.73 0.3
403,041 + -0.3
403,075 + 0.7
403,131 - -0.5
403,188 - -0.3
403,237 - -1.6
403,278 + -0.5
403,305 - -1.1
403,667 + 16462 mRNA_8094 0.16 0.5
404,217 - 16462 mRNA_8094 0.38 1.6
404,218 - 16462 mRNA_8094 0.38 0.0
404,951 + 16462 mRNA_8094 0.66 1.9
404,964 - 16462 mRNA_8094 0.67 0.2
404,987 + 16462 mRNA_8094 0.68 1.7
405,084 - 16462 mRNA_8094 0.72 -0.1
405,815 - 0.9
405,871 + -0.1
405,875 + -0.2
405,875 + 0.1
405,909 - 0.1
405,913 + 0.2
405,936 + -0.6
405,942 + 0.0
405,950 + 0.4
406,015 - -0.3
406,242 + 0.4
406,532 + 16463 mRNA_8095 0.11 0.7