Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8074

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8073: 16441 - Hypothetical Protein, at 361679 to 362906 16441 mRNA_8074: 16442 - Hypothetical Protein, at 363316 to 363918 16442 mRNA_8075: 16443 - K13525 VCP, CDC48 transitional endoplasmic reticulum ATPase, at 364328 to 367178 16443

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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362,394 + 16441 mRNA_8073 0.58 0.5
362,396 - 16441 mRNA_8073 0.58 -0.0
362,426 + 16441 mRNA_8073 0.61 -0.1
362,537 - 16441 mRNA_8073 0.70 2.1
362,839 - 0.8
362,964 - 0.1
363,551 - 16442 mRNA_8074 0.39 0.5
363,565 - 16442 mRNA_8074 0.41 1.1
363,569 + 16442 mRNA_8074 0.42 1.2
363,691 - 16442 mRNA_8074 0.62 -1.1
363,843 + 16442 mRNA_8074 0.87 0.5
363,961 + 0.6
363,980 - -0.5
363,987 + 1.1
364,120 - -0.0
364,140 - 0.9
364,165 + 0.1
364,281 - 0.9
364,298 - 0.6