Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8070

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8069: 16437 - K11240 MSG5 tyrosine-protein phosphatase MSG5, at 349266 to 352237 16437 mRNA_8070: 16438 - KOG2744 DNA-binding proteins Bright/BRCAA1/RBP1 and related proteins containing BRIGHT domain, at 352971 to 356378 16438 mRNA_8071: 16439 - Hypothetical Protein, at 357161 to 359241 16439

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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351,975 + 0.2
352,103 - 0.1
352,112 + -0.0
352,381 - 0.2
352,381 - 1.6
352,413 - 0.8
352,415 - -0.9
352,422 - 0.2
352,547 - 0.9
352,692 - 0.1
352,692 - 0.5
352,693 - -0.0
352,700 + 0.3
352,709 - -1.4
352,714 + 1.1
352,855 - -0.1
352,884 - 0.4
352,999 - 0.3
353,272 - 0.9
353,425 - 16438 mRNA_8070 0.13 0.4
353,440 + 16438 mRNA_8070 0.14 1.8
353,507 - 16438 mRNA_8070 0.16 0.3
353,521 + 16438 mRNA_8070 0.16 0.6
354,060 + 16438 mRNA_8070 0.32 0.1
354,141 + 16438 mRNA_8070 0.34 0.8
354,298 + 16438 mRNA_8070 0.39 -1.2
354,417 + 16438 mRNA_8070 0.42 0.6
354,542 - 16438 mRNA_8070 0.46 0.8
355,010 + 16438 mRNA_8070 0.60 -0.1
355,170 + 16438 mRNA_8070 0.65 0.3
355,201 - 16438 mRNA_8070 0.65 0.3
355,461 - 16438 mRNA_8070 0.73 -0.0
355,720 - 16438 mRNA_8070 0.81 0.7
355,736 + 16438 mRNA_8070 0.81 -1.5
355,993 - 16438 mRNA_8070 0.89 -0.2
356,002 + 16438 mRNA_8070 0.89 -0.2
356,006 + 16438 mRNA_8070 0.89 -0.8
356,185 - -2.0
356,224 + 0.5
356,228 + -0.4
356,331 - -0.2
356,336 + 0.5
356,344 + -1.0
356,361 + 0.8
356,372 - 0.7
356,373 - 1.0
356,374 - 1.2
356,389 + 0.9
356,390 + 0.7
356,411 - 1.0
356,431 - 0.4
356,460 + -0.4
356,492 + 0.6
356,492 + 1.6
356,499 + 0.3
356,506 + 0.7
356,533 + 0.6
356,534 - 0.6
356,597 - 0.8
356,608 + -0.0
356,611 - 0.8
356,613 - -0.1
356,614 + 1.7
356,614 + -0.5
356,614 - 0.4
356,618 + -0.0
356,620 + 0.9
356,626 + 1.9
356,626 + -0.1
356,628 - -0.1
356,630 - 0.5
356,633 - -0.3
356,636 + -0.3
356,639 - -0.1
356,658 - 0.0
356,764 - 0.4
356,852 - 2.0
356,866 - 1.0
356,886 - 1.7
356,909 + 0.3
356,916 + 0.6
356,918 - -0.2
356,934 + 0.0
356,934 - -0.5
356,935 + -0.1
356,936 - 0.2
356,949 - -0.2
356,950 - 0.5
356,967 - 0.6
356,997 + -0.3
357,026 + -0.2
357,077 + 1.0
357,128 - 0.2
357,223 + 0.5