Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8052

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8051: 16419 - K02958 RP-S15e, RPS15 small subunit ribosomal protein S15e, at 305928 to 306584 16419 mRNA_8052: 16420 - KOG2372 Oxidation resistance protein, at 307058 to 308931 16420 mRNA_8053: 16421 - K03037 PSMD6, RPN7 26S proteasome regulatory subunit N7, at 309044 to 310701 16421

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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306,699 - 1.2
306,709 - -0.2
306,714 - -0.5
306,752 + 0.9
306,848 - 0.3
306,863 + 0.5
306,866 - 1.2
306,866 - 1.3
306,871 - 0.3
306,875 + -0.8
306,875 + 0.9
307,211 + -0.7
307,316 - 16420 mRNA_8052 0.14 0.1
307,335 + 16420 mRNA_8052 0.15 0.3
307,778 + 16420 mRNA_8052 0.38 -0.6
307,988 - 16420 mRNA_8052 0.50 -1.4
307,997 + 16420 mRNA_8052 0.50 -0.0
308,280 + 16420 mRNA_8052 0.65 1.1
308,357 + 16420 mRNA_8052 0.69 -0.0
308,475 + 16420 mRNA_8052 0.76 0.1
308,751 - 0.2
308,758 - -0.3
308,764 - 0.9
308,924 + 0.6
308,930 + -0.4