Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8010

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8009: 16377 - K02515 HSL1 serine/threonine-protein kinase HSL1, negative regulator of Swe1 kinase, at 204199 to 205713 16377 mRNA_8010: 16378 - K15414 C1QBP complement component 1 Q subcomponent-binding protein, mitochondrial, at 206291 to 207434 16378 mRNA_8011: 16379 - K09537 DNAJC17 DnaJ homolog subfamily C member 17, at 207819 to 208967 16379

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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205,797 - 0.1
205,808 - -1.2
205,821 - -0.3
205,965 - 1.7
205,969 + 0.7
205,970 + 1.1
205,984 + 2.0
205,999 - 0.8
206,007 + -0.7
206,009 + -0.0
206,087 - -0.3
206,106 - 0.2
206,125 - -0.3
206,172 + 0.4
206,175 - 0.0
207,025 + 16378 mRNA_8010 0.64 1.6
207,296 - 16378 mRNA_8010 0.88 1.9
207,492 - -0.2
207,505 + 0.5
207,506 + 0.6
207,645 - 0.9
207,651 + 0.8
208,100 - 16379 mRNA_8011 0.24 0.2