Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7985

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7984: 16352 - KOG3030 Lipid phosphate phosphatase and related enzymes of the PAP2 family, at 147825 to 148945 16352 mRNA_7985: 16353 - K15440 TAD1, ADAT1 tRNA-specific adenosine deaminase 1, at 149093 to 150954 16353 mRNA_7986: 16354 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 151105 to 154451 16354

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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148,161 - 16352 mRNA_7984 0.30 0.4
148,166 + 16352 mRNA_7984 0.30 0.3
148,446 - 16352 mRNA_7984 0.55 0.3
148,454 + 16352 mRNA_7984 0.56 0.4
148,459 + 16352 mRNA_7984 0.57 -0.7
148,763 - 16352 mRNA_7984 0.84 -0.1
148,902 - 0.2
148,919 + 0.8
149,043 - 1.8
149,044 - 1.8
149,046 + 0.3
149,046 - 0.2
149,064 + 0.8
149,090 + 0.4
149,335 + 16353 mRNA_7985 0.13 -0.2
149,401 + 16353 mRNA_7985 0.17 -1.2
149,522 + 16353 mRNA_7985 0.23 0.3
149,527 - 16353 mRNA_7985 0.23 0.5
149,660 - 16353 mRNA_7985 0.30 0.8
149,674 + 16353 mRNA_7985 0.31 0.5
150,121 - 16353 mRNA_7985 0.55 -0.3
150,169 - 16353 mRNA_7985 0.58 0.6
150,555 - 16353 mRNA_7985 0.79 -0.1
150,972 + 0.2
151,412 - -0.2
151,417 + 1.5
151,461 + 16354 mRNA_7986 0.11 1.1
151,551 - 16354 mRNA_7986 0.13 0.5
151,713 + 16354 mRNA_7986 0.18 0.2
151,749 - 16354 mRNA_7986 0.19 0.1
151,859 - 16354 mRNA_7986 0.23 -0.3