Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7942

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7940: 16308 - Hypothetical Protein, at 60107 to 61381 16308 mRNA_7941: 16309 - Hypothetical Protein, at 61623 to 61945 16309 mRNA_7942: 16310 - K12824 TCERG1, CA150 transcription elongation regulator 1, at 62103 to 65141 16310 mRNA_7943: 16311 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 65547 to 69135 16311

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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61,125 + 16308 mRNA_7940 0.80 0.1
61,208 + 16308 mRNA_7940 0.86 1.0
61,311 - 1.0
61,317 + 2.7
61,512 + 0.1
61,796 + 16309 mRNA_7941 0.54 0.4
61,806 - 16309 mRNA_7941 0.57 0.8
61,807 + 16309 mRNA_7941 0.57 0.1
61,924 + -0.3
62,085 - 1.1
62,466 + 16310 mRNA_7942 0.12 0.0
62,911 - 16310 mRNA_7942 0.27 0.3
62,945 + 16310 mRNA_7942 0.28 -0.2
62,946 - 16310 mRNA_7942 0.28 -0.1
62,971 - 16310 mRNA_7942 0.29 0.6
63,230 + 16310 mRNA_7942 0.37 0.1
63,233 - 16310 mRNA_7942 0.37 1.1
63,582 - 16310 mRNA_7942 0.49 -0.0
64,078 - 16310 mRNA_7942 0.65 1.3
65,252 + 0.8
65,353 + 0.8
65,464 + 1.7
65,466 - -1.0
65,503 - 0.6
65,562 + 0.6
65,973 - 16311 mRNA_7943 0.12 -0.1
66,101 - 16311 mRNA_7943 0.15 0.8