Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7919

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7919: 16287 - K01489 cdd, CDA cytidine deaminase, at 22432 to 23509 16287 mRNA_7920: 16288 - K02219 CKS1 cyclin-dependent kinase regulatory subunit CKS1, at 24120 to 24922 16288

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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21,538 + 0.4
21,584 - 0.1
21,590 + 0.1
21,590 + 0.5
21,596 + 0.1
21,607 + -0.2
21,618 + 1.9
21,755 - 0.0
21,763 + 0.4
21,764 + 0.0
21,770 + -0.0
21,813 - -0.5
21,815 - 0.1
21,815 + -0.5
21,819 - 0.3
21,819 + 0.7
21,820 - 1.6
21,821 + 0.4
21,824 - 0.4
21,831 - 0.8
21,833 - 0.1
21,835 - 1.2
21,836 + 1.0
21,837 - 0.2
21,837 + 1.1
21,838 + -0.8
21,842 + -0.1
21,845 - 0.4
21,847 + 0.3
21,848 + 0.6
21,851 + 0.7
21,867 + 0.8
21,868 - 0.2
21,870 - 0.5
21,897 + 1.7
21,932 - 2.3
22,031 - 0.4
22,122 + -0.1
22,162 + 0.4
22,181 + 0.6
22,193 + 0.1
22,297 + -0.1
22,436 + 1.3
22,474 - 0.0
22,743 - 16287 mRNA_7919 0.29 0.1
22,752 + 16287 mRNA_7919 0.30 1.2
22,759 + 16287 mRNA_7919 0.30 0.1
22,920 + 16287 mRNA_7919 0.45 2.0
22,960 - 16287 mRNA_7919 0.49 -0.4
23,214 + 16287 mRNA_7919 0.73 -0.1
23,443 + 0.7
23,865 + 0.2
23,900 + 0.3
23,902 - 1.3
23,950 + -0.6
24,079 + 0.4
24,136 + -0.2
24,299 - 16288 mRNA_7920 0.22 1.0
24,319 + 16288 mRNA_7920 0.25 0.1
24,323 - 16288 mRNA_7920 0.25 0.2
24,434 + 16288 mRNA_7920 0.39 -0.5