Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7917

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7916: 16284 - K08683 HSD17B10 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 14684 to 15975 16284 mRNA_7917: 16285 - K18477 RMT2 type IV protein arginine methyltransferase, at 16350 to 18077 16285 mRNA_7918: 16286 - K15523 FN3KRP protein-ribulosamine 3-kinase, at 18272 to 19315 16286

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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15,555 + 16284 mRNA_7916 0.67 2.3
15,576 + 16284 mRNA_7916 0.69 1.2
15,823 - 16284 mRNA_7916 0.88 0.3
15,852 + 0.3
16,151 - -0.5
16,153 - 0.6
16,182 + 0.0
16,184 - 0.3
16,282 - 0.6
16,291 - 0.3
16,291 - 0.4
16,303 + 1.0
16,307 - -2.3
16,309 + 0.4
16,310 - 0.2
16,314 + 0.5
16,317 + 1.7
16,325 - -0.1
16,344 - 0.8
16,360 - 0.6
16,446 - -0.1
16,663 - 16285 mRNA_7917 0.18 0.5
16,997 - 16285 mRNA_7917 0.37 -0.1
17,331 + 16285 mRNA_7917 0.57 0.8
17,480 - 16285 mRNA_7917 0.65 -0.1
17,684 - 16285 mRNA_7917 0.77 0.1
17,789 - 16285 mRNA_7917 0.83 0.4
17,900 + 16285 mRNA_7917 0.90 -0.9
18,055 + 2.2
18,058 - 0.6
18,219 + -0.1
18,322 - -0.3
18,351 - 0.5
18,358 - 0.3
18,417 - 16286 mRNA_7918 0.14 0.2
18,480 - 16286 mRNA_7918 0.20 -0.5
18,788 - 16286 mRNA_7918 0.49 1.7
18,791 - 16286 mRNA_7918 0.50 0.3
18,915 + 16286 mRNA_7918 0.62 0.1
18,916 - 16286 mRNA_7918 0.62 0.5
19,036 + 16286 mRNA_7918 0.73 0.4