Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7907

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7906: 16274 - BLAST Protein of unknown function [Pyronema omphalodes CBS ..., at 1346644 to 1348770 16274 mRNA_7907: 16275 - K14951 ATP13A3_4_5 cation-transporting ATPase 13A3/4/5, at 1348898 to 1356379 16275 mRNA_7908: 16276 - K03783 punA, PNP purine-nucleoside phosphorylase, at 1357021 to 1359036 16276

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,347,923 - 16274 mRNA_7906 0.60 0.2
1,347,929 - 16274 mRNA_7906 0.60 -0.1
1,348,103 - 16274 mRNA_7906 0.69 -0.2
1,348,120 - 16274 mRNA_7906 0.69 -0.6
1,348,121 - 16274 mRNA_7906 0.69 0.3
1,348,224 + 16274 mRNA_7906 0.74 -0.8
1,348,299 - 16274 mRNA_7906 0.78 0.4
1,348,304 + 16274 mRNA_7906 0.78 -0.1
1,348,433 + 16274 mRNA_7906 0.84 -1.4
1,348,706 - 2.0
1,348,720 + -0.0
1,348,760 - -0.6
1,350,609 + 16275 mRNA_7907 0.23 1.0
1,350,621 - 16275 mRNA_7907 0.23 0.6
1,350,626 + 16275 mRNA_7907 0.23 -0.3
1,350,889 - 16275 mRNA_7907 0.27 -2.2
1,350,898 - 16275 mRNA_7907 0.27 -0.4
1,350,910 - 16275 mRNA_7907 0.27 0.3
1,351,170 + 16275 mRNA_7907 0.30 -0.0
1,351,174 + 16275 mRNA_7907 0.30 0.1
1,351,335 + 16275 mRNA_7907 0.33 0.3
1,351,387 - 16275 mRNA_7907 0.33 0.5
1,352,075 - 16275 mRNA_7907 0.42 0.2
1,352,080 - 16275 mRNA_7907 0.43 0.5
1,352,090 + 16275 mRNA_7907 0.43 0.3
1,352,100 + 16275 mRNA_7907 0.43 -0.0
1,352,275 - 16275 mRNA_7907 0.45 -0.6
1,352,275 + 16275 mRNA_7907 0.45 0.7
1,352,429 + 16275 mRNA_7907 0.47 -1.4
1,352,533 - 16275 mRNA_7907 0.49 1.1
1,352,533 - 16275 mRNA_7907 0.49 0.0
1,352,533 - 16275 mRNA_7907 0.49 0.1
1,352,797 - 16275 mRNA_7907 0.52 0.5
1,352,933 + 16275 mRNA_7907 0.54 1.3
1,352,945 - 16275 mRNA_7907 0.54 0.6
1,352,951 - 16275 mRNA_7907 0.54 0.5
1,353,121 + 16275 mRNA_7907 0.56 2.2
1,353,161 - 16275 mRNA_7907 0.57 0.4
1,353,296 - 16275 mRNA_7907 0.59 0.9
1,353,426 + 16275 mRNA_7907 0.61 0.5
1,353,441 - 16275 mRNA_7907 0.61 0.9
1,354,163 - 16275 mRNA_7907 0.70 0.5
1,354,191 + 16275 mRNA_7907 0.71 -0.1
1,354,318 + 16275 mRNA_7907 0.72 -1.4
1,354,602 + 16275 mRNA_7907 0.76 0.3
1,354,620 + 16275 mRNA_7907 0.76 -0.3
1,354,836 - 16275 mRNA_7907 0.79 1.2
1,354,890 - 16275 mRNA_7907 0.80 1.3
1,354,893 - 16275 mRNA_7907 0.80 -0.3
1,354,907 + 16275 mRNA_7907 0.80 0.5
1,354,941 + 16275 mRNA_7907 0.81 -0.3
1,355,184 + 16275 mRNA_7907 0.84 0.7
1,355,343 - 16275 mRNA_7907 0.86 -0.2
1,355,374 + 16275 mRNA_7907 0.87 0.1
1,355,490 - 16275 mRNA_7907 0.88 0.2
1,355,492 + 16275 mRNA_7907 0.88 -0.3
1,355,640 - 1.4
1,355,825 - 1.1
1,356,376 - 0.7
1,356,422 + 1.4
1,356,501 - -0.3
1,356,521 + 1.0
1,356,522 - 0.4
1,356,668 + 2.1
1,356,775 - 1.3
1,356,775 - 0.7
1,356,814 + -0.7
1,356,823 - 0.4
1,356,925 - -0.9
1,356,925 - -0.8
1,356,926 + -0.8
1,356,964 + 0.2
1,357,096 + 0.1
1,357,117 - 0.6
1,357,252 - 16276 mRNA_7908 0.11 0.4
1,357,257 - 16276 mRNA_7908 0.12 0.4
1,357,258 + 16276 mRNA_7908 0.12 -0.1