Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7872

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7871: 16239 - HMMPfam-NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit-PF10785,HMMPfam-C-terminal of NADH-ubiquinone oxidoreductase 21 kDa subunit-PF12853, at 1268748 to 1269594 16239 mRNA_7872: 16240 - K11411 SIRT1, SIR2L1 NAD-dependent deacetylase sirtuin 1, at 1269870 to 1272263 16240 mRNA_7873: 16241 - K10258 TER, TSC13, CER10 very-long-chain enoyl-CoA reductase, at 1272427 to 1274098 16241

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,269,696 + 0.9
1,269,712 - 0.1
1,269,735 + 1.4
1,269,746 - 0.6
1,269,857 - -0.5
1,269,858 + -0.5
1,269,881 - 1.1
1,269,910 + -0.6
1,270,030 - 0.9
1,270,160 - 16240 mRNA_7872 0.12 0.1
1,270,420 + 16240 mRNA_7872 0.23 0.9
1,270,584 - 16240 mRNA_7872 0.30 0.5
1,270,614 - 16240 mRNA_7872 0.31 0.3
1,270,798 + 16240 mRNA_7872 0.39 -0.4
1,271,001 - 16240 mRNA_7872 0.47 1.7
1,271,004 + 16240 mRNA_7872 0.47 0.2
1,271,185 - 16240 mRNA_7872 0.55 -0.1
1,271,332 - 16240 mRNA_7872 0.61 -0.8
1,271,422 + 16240 mRNA_7872 0.65 0.7
1,271,650 - 16240 mRNA_7872 0.74 0.2
1,271,668 + 16240 mRNA_7872 0.75 0.3
1,271,730 + 16240 mRNA_7872 0.78 0.2
1,271,912 + 16240 mRNA_7872 0.85 -0.3