Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7826

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7825: 16193 - K00759 APRT, apt adenine phosphoribosyltransferase, at 1153417 to 1154602 16193 mRNA_7826: 16194 - KOG2533 Permease of the major facilitator superfamily, at 1154864 to 1157345 16194 mRNA_7827: 16195 - KOG4680 Uncharacterized conserved protein, contains ML domain, at 1158010 to 1158995 16195

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,153,953 - 16193 mRNA_7825 0.45 0.6
1,154,085 - 16193 mRNA_7825 0.56 0.3
1,154,100 + 16193 mRNA_7825 0.58 0.3
1,154,516 - 0.2
1,154,674 - 1.4
1,154,813 - 1.1
1,154,816 + 0.3
1,155,409 - 16194 mRNA_7826 0.22 0.1
1,155,565 - 16194 mRNA_7826 0.28 -0.6
1,155,571 + 16194 mRNA_7826 0.28 0.9
1,156,411 + 16194 mRNA_7826 0.62 1.1
1,156,589 + 16194 mRNA_7826 0.70 -0.0
1,156,702 - 16194 mRNA_7826 0.74 0.2
1,156,710 + 16194 mRNA_7826 0.74 0.3
1,157,279 - 1.1
1,157,305 + 2.0
1,157,312 + 0.0
1,157,344 - -0.0
1,157,566 + 0.2
1,157,582 + 0.3
1,157,723 - 0.6
1,157,743 - 0.3
1,157,748 - -0.6
1,157,762 - -1.2
1,157,773 + 0.4
1,157,785 + 0.5
1,157,798 + 1.2
1,157,870 + -0.3
1,157,882 + -1.2
1,157,998 + -1.3
1,158,014 + -0.7
1,158,183 + 16195 mRNA_7827 0.18 1.1
1,158,221 + 16195 mRNA_7827 0.21 0.1